DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and arid3a

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:XP_009304080.1 Gene:arid3a / 562799 ZFINID:ZDB-GENE-140106-97 Length:524 Species:Danio rerio


Alignment Length:390 Identity:156/390 - (40%)
Similarity:204/390 - (52%) Gaps:98/390 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 APSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSF 306
            |..|.|:.   |.:.::|:.||:.....|.:..|::||||   |||||::.||||||||||||||
Zfish   157 ARPGSESE---ARALTHSAHSSQGPLHGQDHADWTYEEQF---RQLYELDSDPKRKEFLDDLFSF 215

  Fly   307 MQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRT 371
            |||:|||:||:|||||.|||||.||.||..:||||:|||||||:||.|||:||:|||||||||||
Zfish   216 MQKKGTPVNRIPIMAKQVLDLYMLYQLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 280

  Fly   372 QYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQ--YEAMHNQMPMTPISRP------- 427
            |||||||.|||||:.||.|.||:||||.|||||||..:|.  :....|..| |.:|.|       
Zfish   281 QYMKYLYTYECEKRALSNPNELKAAIDSNRREGRRQGFGNSLFTYSPNGTP-TMLSSPKRTMSSM 344

  Fly   428 --SLPG----------------GMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQ 474
              :||.                |.|...|.:|.||:..|    ||||||.||...::..      
Zfish   345 GIALPSNGASISSIQNIKKEDDGFQTRLPASLATHSVAA----AQAAAAQAATIAQVAA------ 399

  Fly   475 MPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQQQSQQQH 539
                            |:.::...|.|.||              :::......:.|:..|...||
Zfish   400 ----------------LEQLRDNLETGEPP--------------RKKIALPLEEHQRLLQRALQH 434

  Fly   540 HLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKRE 604
            :|.               |::||:.:....:|..|.|.|         |:||:.:..|..::..|
Zfish   435 NLM---------------AMTAQIPMNIRINNQESRPDS---------AMNLTTNGLNSISMSLE 475

  Fly   605  604
            Zfish   476  475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 76/91 (84%)
arid3aXP_009304080.1 BRIGHT 203..294 CDD:128777 75/90 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592200
Domainoid 1 1.000 153 1.000 Domainoid score I4247
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001099
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105170
Panther 1 1.100 - - O PTHR15348
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.930

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