DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and Arid3b

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:NP_001102471.1 Gene:Arid3b / 367092 RGDID:1306335 Length:565 Species:Rattus norvegicus


Alignment Length:519 Identity:172/519 - (33%)
Similarity:229/519 - (44%) Gaps:152/519 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 SPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQ------------------- 283
            :|...|.|:.......:::....:...|...|     |:.:||.||                   
  Rat   136 APGLPPQGQTKEDHTKDASKAPPSVPTAGQPS-----WNLDEQLKQNGALAWSDDADGGRGREIS 195

  Fly   284 --VRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINK 346
              ..:|||::.||:|||||||||.|||||||||||:|||||.:||||.||.||..:||||::|||
  Rat   196 RDFAKLYELDGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINK 260

  Fly   347 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQ 411
            |:|:||.|||:||:||||||||||||||||||.||||||.||:|||||||||||||||||.||..
  Rat   261 KIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSS 325

  Fly   412 YEAMHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMP 476
                            ||.|    .||.|           .|.||||||||.....||||....|
  Rat   326 ----------------SLFG----YSPAA-----------AAAAAAAAAAASAASAGAPALLSPP 359

  Fly   477 NLVKQEIESRMMEYLQLIQA----------------KKEQGMP-----------PVLG---GNHP 511
            .:        ....|.|..:                :|..|:|           |:.|   ||..
  Rat   360 KI--------RFSILGLGSSSGTNTSSPRIPPASTLRKGDGVPVPVPNRLAVSGPLAGQQAGNRT 416

  Fly   512 HQQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPP 576
            ...:..:::.:.....:::..:.|:::..|.||..:.....:::...:..::         |...
  Rat   417 GTLEQLRERLESGEPPEKKASRLSEEEQRLVQQAFQRNLFSMARQLPMKIRI---------NGRE 472

  Fly   577 GSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRVGSGLLPPGFPA 641
            ..|.||   ..||||:.|  |:.:|...         ||.|               |:...|  .
  Rat   473 DRAETS---AAALNLTTS--NIGSINMS---------VDID---------------GITYTG--V 506

  Fly   642 NFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNG 705
            .|...|    .|...||....|:|....::|             :::.:|||.|....|....|
  Rat   507 LFAQKP----VVHLIAGSAPQSIGSSASSSS-------------SSSSSSSSSHCSPSPTSSRG 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 73/91 (80%)
Arid3bNP_001102471.1 ARID_ARID3B 196..321 CDD:350643 96/124 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350493
Domainoid 1 1.000 150 1.000 Domainoid score I4280
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 255 1.000 Inparanoid score I3096
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001099
OrthoInspector 1 1.000 - - otm44987
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15348
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.940

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