Protein Alignment retn and Arid3a

DIOPT Version :9

• Sequence 1: NP_788434.1
• Gene: retn / 45976
• FlyBaseID: FBgn0004795
• Length: 911
• Species: Drosophila melanogaster
• Sequence 2: NP_001101536.2
• Gene: Arid3a / 314616
• RGDID: 1305299
• Length: 594
• Species: Rattus norvegicus
• Alignment Length: 652
• Identity: 207/652 - (31%)
• Similarity: 266/652 - (40%)
• Gaps: 205/652 - (31%)

  Fly    37 DEMRDCDSVDGEHHQLSAKAAI---AARLSHTVSGG---------GGSFASPEPQTELPLSHHHQ 89
            ||.|:.::......|::|.||:   ||.|.|..|.|         ||:.:||      .|....|
  Rat    45 DEDREPENARMHRTQMAALAAMRAAAAGLRHPSSPGGSEDEDTAQGGTLSSP------ALHGSGQ 103

  Fly    90 LPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLP 154
            ..|.| ....|..|.:|.............||:|..:..:..    |.|:........
  Rat   104 EGPGH-TEGDGHLMDMGSDDDTKPKWEEQELEELGEEEEEED----EDDFEEEEEDEE------- 156

  Fly   155 TTISSGFPLPHNSVAFGHVTSSPSGGNGSSYNGGTTPTNSSNSNATTNGGGTAGPGGTGGSGGGG 219
               ..|..||          .|.|.|:...:.....||.      |..|.|  ||....|....|
  Rat   157 ---EEGLGLP----------ESASLGSAGLFTRKAPPTQ------TFRGDG--GPRMLSGPERLG 200

  Fly   220 GGGGGGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQV 284
            .|        ..|....||....|                           .:..|:||||||
  Rat   201 PG--------PAHPSHVASQMPPP---------------------------DHGDWTFEEQFK-- 228

  Fly   285 RQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLW 349
             ||||::.|||||||||||||||||||||:||:|||||.||||:.||.||..:||||:|||||||
  Rat   229 -QLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLW 292

  Fly   350 QEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG---- 410
            :||.|||:||:|||||||||||||||||||||||::.||:|.|||||||.|||||||.|:|
  Rat   293 REITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFGGSLF 357

  Fly   411 --QYEAMHNQM--PMTPISRPSL---------------------------PGGMQQMSPLALVTH 444
              .....|:.:  |..|::...|                           ||.:    |::|..|
  Rat   358 AYSPSGAHSMLSSPKLPVTSLGLAASTNGSSITPTPKIKKEEDSAIPITVPGRL----PVSLAGH 418

  Fly   445 AAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGN 509
            ..||    |||||..|||....:.|.|..                 |:.::.|.|...||
  Rat   419 PVVA----AQAAAVQAAAAQAAVAAQAAA-----------------LEQLREKLESTEPP----- 457

  Fly   510 HPHQQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNS 574
                    :::.......||:..|::.||..|                |::||:.:       |.
  Rat   458 --------EKKMALVADEQQRLMQRAVQQSFL----------------AMTAQLPM-------NI 491

  Fly   575 PPGSAHTSPQQREALNL-SDSPPNLTNIKRERE---------REPTPEPVDQDDKFVDQPPPAKR 629
            ...|..:..:|..|:|| |.:..|..::..|..         .:|.|          ..||||..
  Rat   492 RINSQASESRQDPAVNLTSANGSNSISMSVEMNGIVYTGVLFAQPPP----------PTPPPASS 546

  Fly   630 VG 631
            .|
  Rat   547 KG 548

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	BRIGHT	294..386	CDD:128777	76/91 (84%)
Arid3a	NP_001101536.2	ARID_ARID3A	217..349	CDD:350642	103/134 (77%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166350492
Domainoid	1	1.000	150	1.000	Domainoid score	I4280
eggNOG	1	0.900	-	-		E1_KOG2744
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	255	1.000	Inparanoid score	I3096
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001099
OrthoInspector	1	1.000	-	-		otm44987
orthoMCL	1	0.900	-	-		OOG6_105170
Panther	1	1.100	-	-	O	PTHR15348
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	11	10.790