DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and sol1

DIOPT Version :10

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:NP_001417924.1 Gene:sol1 / 2540318 PomBaseID:SPBC30B4.04C Length:865 Species:Schizosaccharomyces pombe


Alignment Length:403 Identity:91/403 - (22%)
Similarity:133/403 - (33%) Gaps:155/403 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 HAAAFG-ANMLPTTISSGFPLPHNSVAFGHVTSSPSGGNGSSYNGGTTPTNSSN------SNATT 201
            :||.:| |||:.|:.:.    |:|.........|||           |..|..|      ||...
pombe    45 YAAEYGNANMMNTSENE----PNNLAHSQPFRQSPS-----------TQRNLPNQSFDFASNGAW 94

  Fly   202 NGGGTAGPGGTGGSGGGGGGGGGGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSSTSSEAS 266
            ||.|:.                           .::|| ..||            |......|..
pombe    95 NGSGSV---------------------------KYSSP-MMPS------------SRIPFQQEKE 119

  Fly   267 NSSQQNNGWSFEEQFKQVRQLYE--------------------INDDPKRKE------------- 298
            .:.||      ::|.:|.:|||:                    ||..|..::             
pombe   120 AAMQQ------QQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPAPSPNTPSG 178

  Fly   299 ---------------FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 348
                           |:..|.|||:||||||...|.:..:.::|..||.||:..||...|.....
pombe   179 NANQLTPAYAASFDKFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNF 243

  Fly   349 WQEIIKGLHLPSSITSAAFTLRTQYM-KYLYPYE-------CEKKNLSTPAELQAAIDGNRR-EG 404
            |.:|...|..||   ..|.:|..||. .||.|||       .::|:|.     ||..:.:.. :.
pombe   244 WPKISASLGFPS---PDAISLLIQYYNSYLLPYEEAWLAAQQQQKSLQ-----QAKANHSANVQS 300

  Fly   405 RRSSYGQY------EAMHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAH 463
            |..:|.|.      ||:|        :..|:.|.:...||     ..|...|:.:.||....::.
pombe   301 RPKNYPQKPVQTTPEAVH--------ANGSMHGSLHSKSP-----SPAFTANRFSPAAPTTVSSE 352

  Fly   464 HRLMGAPAFGQMP 476
            .   .||.:...|
pombe   353 R---NAPPYPSAP 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 ARID_Dri-like 277..401 CDD:350645 46/179 (26%)
sol1NP_001417924.1 ARID_Swi1p-like 189..275 CDD:350635 33/88 (38%)
PRK12323 <299..>408 CDD:481241 17/80 (21%)

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