Protein Alignment retn and Arid5a

DIOPT Version :10

• Sequence 1: NP_788434.1
• Gene: retn / 45976
• FlyBaseID: FBgn0004795
• Length: 911
• Species: Drosophila melanogaster
• Sequence 2: NP_001277655.1
• Gene: Arid5a / 214855
• MGIID: 2443039
• Length: 619
• Species: Mus musculus
• Alignment Length: 511
• Identity: 106/511 - (20%)
• Similarity: 189/511 - (36%)
• Gaps: 131/511 - (25%)

  Fly   247 EARHFAANSASNSSTSSEASNSSQQNNGWSFEEQFKQVRQLYEINDDP-------KRKEFLDDLF 304
            :|.|..|..|..::..||..:..|.......:::..:.:...::.|.|       :.:.||..|:
Mouse    26 DAEHQTAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQDSPEAGGEQEEEQAFLVSLY 90

  Fly   305 SFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTL 369
            .||::|.|||.|:|.:....::|:::|..|...|....|..::||:.:...|......||||...
Mouse    91 KFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCT 155

  Fly   370 RTQYMKYLYPY------ECEK--------------KNL----STPAELQAAIDGNRREGRRSSYG 410
            |..|.:.:.||      |.:|              |.|    .|..:|:.|.|...|...:::.|
Mouse   156 RRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPG 220

  Fly   411 QYEA---MHNQMPMTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGA--- 469
            :.::   ...|:|....||.|    .:|:.|::       ..:.....|::...|:.||:.:
Mouse   221 KTKSDATGQTQLPCQGSSRDS----TEQLGPVS-------GPSPPLTGASSCPEAYKRLLSSFYC 274

  Fly   470 -PAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQQ 533
             .|.|.|..|.|:::.:::.: .:.:|.::|       |..|..:..:...|...|:     .:.
Mouse   275 KGAHGIMSPLAKKKLLAQVSK-AEALQCQEE-------GCRHGARSPNKDIQDSPQN-----LRG 326

  Fly   534 QSQQQHHLQQQRQRSQSPDLSKHEALSAQV----------ALWHMYHNNNSPPGSAHT------- 581
            .::...|....|:..|:|..|..  :.|||          ..:|.|......|.|.|.
Mouse   327 PAENSEHQLTPREGLQAPGGSTR--MEAQVGPCPTAPMFSGCFHAYPTEVLKPVSQHPRDFFSGL 389

  Fly   582 -------SPQQREALNLSDS---------PPNLTNIKREREREPTPEPVDQDDKFVDQPPPAKRV 630
                   .|.:.|.....:|         .|:..:....|:|...|:|     |.....|.||
Mouse   390 KDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKP-----KACWVSPMAK-- 447

  Fly   631 GSGLLP---PGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDYAHG 683
                :|   ||.|     :||..:          |.:|     :..|..|:.:|||
Mouse   448 ----VPTERPGAP-----SPHPSS----------PGLG-----SKRGLEEEGFAHG 479

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	ARID_Dri-like	277..401	CDD:350645	37/154 (24%)
Arid5a	NP_001277655.1	ARID_ARID5A	85..167	CDD:350648	26/81 (32%)