DRSC/TRiP Functional Genomics Resources

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Protein Alignment retn and ARID3C

DIOPT Version :9

Sequence 1:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster
Sequence 2:NP_001017363.1 Gene:ARID3C / 138715 HGNCID:21209 Length:412 Species:Homo sapiens


Alignment Length:361 Identity:143/361 - (39%)
Similarity:185/361 - (51%) Gaps:78/361 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 GGGGGVGGHQFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQ----QNNGWSFEEQFKQV 284
            |..|.||..:...|........:......|...|.......:|.|||    ..:.|::|||||  
Human    43 GALGNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFK-- 105

  Fly   285 RQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLW 349
             ||||::.|||||||||||||||||||||:||:|||||.|||||.|:.||.|:||||:|||:|:|
Human   106 -QLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVW 169

  Fly   350 QEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSY----- 409
            :|:.:||.||::||||||||||||||||||||||.:.||:|.|||||||.|||||||.:|     
Human   170 REVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPL 234

  Fly   410 ---------GQYEAMHNQMPMTPISRPSLPGGMQ------------QMSP--------------L 439
                     |..:......|..|.::.| ||..|            |:||              |
Human   235 FGLAGPPPRGAQDPALGPGPAPPATQSS-PGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCL 298

  Fly   440 ALVTHAAVANNQQAQAAAAAAAAHHRLMG---------APAF---GQMP----------NL---- 478
            ||....|:...::..|..........|||         .|:|   |::|          ||    
Human   299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLAGSG 363

  Fly   479 ---VKQEIESRMMEYLQLIQAKKEQGMPPVLGGNHP 511
               :...:|...:.|..::.|:: |.:|...|..:|
Human   364 ISSINMALEINGVVYTGVLFARR-QPVPASQGPTNP 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retnNP_788434.1 BRIGHT 294..386 CDD:128777 72/91 (79%)
ARID3CNP_001017363.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..96 11/52 (21%)
ARID 101..227 CDD:355778 98/128 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..278 7/46 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..412 3/11 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156576
Domainoid 1 1.000 150 1.000 Domainoid score I4382
eggNOG 1 0.900 - - E1_KOG2744
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 247 1.000 Inparanoid score I3263
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001099
OrthoInspector 1 1.000 - - otm40843
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15348
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.970

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