Protein Alignment retn and arid3b

DIOPT Version :10

• Sequence 1: NP_788434.1
• Gene: retn / 45976
• FlyBaseID: FBgn0004795
• Length: 911
• Species: Drosophila melanogaster
• Sequence 2: XP_004916060.1
• Gene: arid3b / 100496484
• XenbaseID: XB-GENE-1018456
• Length: 548
• Species: Xenopus tropicalis
• Alignment Length: 572
• Identity: 184/572 - (32%)
• Similarity: 258/572 - (45%)
• Gaps: 169/572 - (29%)

  Fly   106 GGLHSIPNLQHSD---------------------VLEKLK---------MQVRDMKVGLMEQDYA 140
            ||..|:|:|..|.                     |:|:|:         |:.|:.::...::.||
 Frog     7 GGRESMPSLIPSGLNPALSSSSHMHPKQGMKLEAVMEQLQKQQQQAARSMEERERQIRETQRLYA 71

  Fly   141 ---AAAHAAAFGANMLPTTISSGFPLPHNS------VAFGHVTSSPS-----GGNGS----SYNG 187
               |:.||    ...:|.      |.|::|      |...|..|.|.     .|:||    ||.
 Frog    72 QQLASQHA----MKSIPG------PSPNSSGRTRLPVGPPHSASDPEDDDEMDGDGSDDGDSYE- 125

  Fly   188 GTTPTNSSNSNATTNG----------GGTAGPGGTGGSGGGGGGGGGGGGGVGGHQFSFASPTAA 242
              ...:|..::.||..          .|.:.|...               |...|:     |...
 Frog   126 --EREDSREAHGTTLAQKYLQAQRELQGISVPNRQ---------------GTQNHR-----PLTV 168

  Fly   243 PSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFE------EQFKQVRQLYEINDDPKRKEFLD 301
            .......:|.| |..|....:...:..|:|:.|..:      |..:...:|||::.|||||||||
 Frog   169 KEEPAEENFNA-SPGNLHKQNMEEHIKQENSSWCEDPDGRSRETSRDFAKLYELDSDPKRKEFLD 232

  Fly   302 DLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAA 366
            |||.||||:||||:|:|||||.:||||.||.||..:||||:|||||:|:||.|||:||:||||||
 Frog   233 DLFMFMQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAA 297

  Fly   367 FTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPM---------- 421
            ||||||||||||.||||||:||:|||||||||||||||||.|||.....::..|.
 Frog   298 FTLRTQYMKYLYLYECEKKSLSSPAELQAAIDGNRREGRRPSYGSSTFSYSPTPQGTSGLLGANK 362

  Fly   422 TPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLV----KQE 482
            .|:   ::.||..::||   ||.....:|...            |||    |:||..:    :|.
 Frog   363 VPV---AMMGGHTRISP---VTTLKKGDNAVG------------LMG----GRMPLSLPVGTQQT 405

  Fly   483 IESRMMEYLQLIQAKKEQGMPPVLGGNHPHQQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQR 547
            ........|:.::.:.|.|.||        :::.|:...::    ||:..||:.||:.|...||
 Frog   406 PTGVRTASLEQLKDRLEMGEPP--------EKRASRTSVEE----QQRIIQQAFQQNLLSMARQ- 457

  Fly   548 SQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLT 599
                 :.....::.:||                 ..:|...|||..|..|::
 Frog   458 -----IPMKLKINGKVA-----------------QDRQEATLNLGTSSINMS 487

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
retn	NP_788434.1	ARID_Dri-like	277..401	CDD:350645	91/129 (71%)
arid3b	XP_004916060.1	ARID_ARID3B	213..338	CDD:350643	96/124 (77%)