DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and DL1B

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_191735.2 Gene:DL1B / 825349 AraportID:AT3G61760 Length:610 Species:Arabidopsis thaliana


Alignment Length:563 Identity:220/563 - (39%)
Similarity:320/563 - (56%) Gaps:51/563 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSLITIVNKLQDAFTSLGVH--------MQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSG 57
            |:|||.:|||:|.|.|:||.|        :...||.||||||||:|||||||:.|||||||||:|
plant     1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAG 65

  Fly    58 IVTRRPLILQL--INGVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTG-SNKGISNIPINLRV 119
            |||||||:|||  |:...||.||:|:..|||:.|..:|:||.|||||.|| |:|.||.:||:|.:
plant    66 IVTRRPLVLQLHRIDEGKEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSI 130

  Fly   120 YSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKL 184
            :||:|:||||:|||||||||:..||..|.|.|:.|:..||.|..|:|||::|||.|||.|||:|:
plant   131 FSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKI 195

  Fly   185 AKEVDPQGVRTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAA 249
            ::||||:|.||.||:||:||||:||:|.||||.:...||..::|||||||.||....|:..|...
plant   196 SREVDPKGDRTFGVLTKIDLMDQGTNAVDILEGRGYKLRYPWVGVVNRSQADINKSVDMIAARRR 260

  Fly   250 ERKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQP 314
            ||.:|.:.|.|||:.:|:|:.||.::|::.|...|:..:|||:..:.|.:..||.|:........
plant   261 ERDYFQTSPEYRHLTERMGSEYLGKMLSKHLEVVIKSRIPGLQSLITKTISELETELSRLGKPVA 325

  Fly   315 GDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKMACDEKE 379
            .||..|...::::.:.....|:..::|:         .|||.|||.:|..:....|.::..|:..
plant   326 ADAGGKLYMIMEICRAFDQTFKEHLDGT---------RSGGEKINSVFDNQFPAAIKRLQFDKHL 381

  Fly   380 LRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMC---TAK 441
            ....:...|....|.:..|..|:..:..:::..:..::.|....||.|...|..::...   |::
plant   382 SMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVSIRGPAEAAVDAVHSILKDLIHKSMGETSE 446

  Fly   442 MSRYPRLREETERIITTHVRQREHSCKEQILLLIDFELAYM----------------NTNHEDFI 490
            :.:||.||.|........:.:.....::..|||:|.|..|:                |..|..| 
plant   447 LKQYPTLRVEVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHSIF- 510

  Fly   491 GFANAQNKSENANKTGTRQLGNQVIRKGHMVIQNL--GIMKDI 531
                     :..|....|::|:.|:...:||...|  .|.|.|
plant   511 ---------DRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSI 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 149/249 (60%)
CrfC 73..>498 CDD:223771 159/444 (36%)
Dynamin_M 212..498 CDD:279383 76/304 (25%)
PH_dynamin 512..644 CDD:269958 7/22 (32%)
PH 552..638 CDD:278594
GED 664..755 CDD:128597
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
DL1BNP_191735.2 DLP_1 33..300 CDD:206738 152/266 (57%)
Dynamin_M 222..500 CDD:395818 74/286 (26%)
GED 513..606 CDD:128597 10/32 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 234 1.000 Domainoid score I626
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264244at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100232
Panther 1 1.100 - - O PTHR11566
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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