DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and DL1D

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_850420.1 Gene:DL1D / 819067 AraportID:AT2G44590 Length:612 Species:Arabidopsis thaliana


Alignment Length:777 Identity:241/777 - (31%)
Similarity:366/777 - (47%) Gaps:200/777 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSLITIVNKLQDAFTSLGVH---------MQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGS 56
            |:|||.::|.:|.|.|.:|.|         :...||.:|||||||:|||||||:.||:|||||||
plant     1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS 65

  Fly    57 GIVTRRPLILQL---INGVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLR 118
            ||||||||:|||   .||..:..||||:..|||::|..:||||||||||:||.||.||:|||:|.
plant    66 GIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLS 130

  Fly   119 VYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALK 183
            ::||:|:||||||||||||||:..||..|.:.|:.|:..::.|..|||||::|||.|:|.|||:|
plant   131 IFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIATSDAMK 195

  Fly   184 LAKEVDPQGVRTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALA 248
            |||||||.|.||.||:|||||||:||:|.|::..:...|:..::|:|||||.||....|:..|..
plant   196 LAKEVDPIGDRTFGVLTKLDLMDKGTNALDVINGRSYKLKYPWVGIVNRSQADINKNVDMMVARR 260

  Fly   249 AERKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQ 313
            .||::|.:.|.|.|:|.|:|:.||.::|::.|.:.||..:|.:...:...:..||:|:::.....
plant   261 KEREYFETSPDYGHLATRMGSEYLAKLLSKLLESVIRSRIPSILSLINNNIEELERELDQLGRPI 325

  Fly   314 PGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKMACDEK 378
            ..||..:...:|.|.:..:..|:..::|.         ..|||:|..||...|...|.|:..|..
plant   326 AIDAGAQLYTILGMCRAFEKIFKEHLDGG---------RPGGARIYGIFDYNLPTAIKKLPFDRH 381

  Fly   379 ELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPV---IKCVDLVVQELSVVVRMC-- 438
            ...:.:...:....|.:..|..|::.:..:::..:...:.|.   :..:.|:::||   ||..  
plant   382 LSLQSVKRIVSESDGYQPHLIAPELGYRRLIEGSLNHFRGPAEASVNAIHLILKEL---VRKAIA 443

  Fly   439 -TAKMSRYPRLREETERIITTHV-RQREHSCKEQILLLIDFELAYMNTNHEDFIGFANAQNKSEN 501
             |.::.|:|.|:.|......:.: :.||.|.| .:|.|:|.|.:|:..   ||            
plant   444 ETEELKRFPSLQIELVAAANSSLDKFREESMK-SVLRLVDMESSYLTV---DF------------ 492

  Fly   502 ANKTGTRQLGNQVIRKGHMVIQNLGIMKDIKLGRSGPLNVRFFSPSTGGSRPYWFVLTSESISWY 566
                         .||.|:..||                                          
plant   493 -------------FRKLHVESQN------------------------------------------ 502

  Fly   567 KDEDEKEKKFMLPLDGLKLRDIEQGFMSMSRRVTFALFSPDGRNVYKDYKQLELSCETVEDVESW 631
                                      ||:|                                   
plant   503 --------------------------MSLS----------------------------------- 506

  Fly   632 KASFLRAGVYPEKQETQENGDESASEESSSDPQLERQVETIRNLVDSYMKIVTKTTRDMVPKAIM 696
                                    |..|:.|...:.....|.:.|.:|:|:|.:|..:.:|||::
plant   507 ------------------------SPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVV 547

  Fly   697 MLIINNAKDFINGELLAHLYASGDQA------QMMEESAESATRR---EEMLRMYRACKDAL 749
            ...:..||    ..||.:.||...|:      |:::|:.....||   .:.|.:|:..:|.:
plant   548 HCQVRQAK----LSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEI 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 145/250 (58%)
CrfC 73..>498 CDD:223771 159/431 (37%)
Dynamin_M 212..498 CDD:279383 72/292 (25%)
PH_dynamin 512..644 CDD:269958 8/131 (6%)
PH 552..638 CDD:278594 3/85 (4%)
GED 664..755 CDD:128597 23/95 (24%)
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
DL1DNP_850420.1 DLP_1 35..301 CDD:206738 152/265 (57%)
CrfC 89..>529 CDD:223771 172/607 (28%)
Dynamin_M 224..496 CDD:279383 73/312 (23%)
GED 515..607 CDD:128597 23/95 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 234 1.000 Domainoid score I626
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264244at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100232
Panther 1 1.100 - - O PTHR11566
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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