DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and Opa1

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_006522717.2 Gene:Opa1 / 74143 MGIID:1921393 Length:1100 Species:Mus musculus


Alignment Length:795 Identity:173/795 - (21%)
Similarity:311/795 - (39%) Gaps:189/795 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLITIVNKLQDAFT--SLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSG-IVTRRPL 64
            |||.:.:::.|..:  ....:.|..||::.|||.|||||:||||........||||| ::||.|:
Mouse   403 SLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPV 467

  Fly    65 ILQLINGVTEYGEFLHIKGKKFSS--FD--------EIRKEIEDETDRVTGSNKGISNIPINLRV 119
            .:.|..|..      |:...|.||  ||        .:|.|||....:.......:|...|:|.|
Mouse   468 KVTLSEGPH------HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNV 526

  Fly   120 YSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKL 184
            ..|.:..:.|:||||:..........|.::.|..:...:::....:||.:...:.|...|....|
Mouse   527 KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL 591

  Fly   185 AKEVDPQGVRTIGVITKLDLMDEGTDA----RDILENKLLPLRR-GYIGVV---NRSQKDIEGRK 241
            ..::||.|.|||.|:||:||.::...:    :.|:|.||.|::. ||..||   ..|.:.||..:
Mouse   592 VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIR 656

  Fly   242 DIHQALAAERKFFLSHPSYRHMADRLGTPYLQ--RVLNQQLTNHIRDTLPGLRDKLQKQMLTLEK 304
            :.      |.:||.:       :..|.|..|:  :|..:.|:..:.|..    .|:.::  ::|:
Mouse   657 EY------EEEFFQN-------SKLLKTSMLKAHQVTTRNLSLAVSDCF----WKMVRE--SVEQ 702

  Fly   305 EVEEFKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFE 369
            :.:.||         .|:..|:  .:.::::.|..|      ::.|||...|| |.|..|.:...
Mouse   703 QADSFK---------ATRFNLE--TEWKNNYPRLRE------LDRNELFEKAK-NEILDEVISLS 749

  Fly   370 IVKMACDEKELRREI-----SFAIRNIH----------------GIRVGLFTP--------DMAF 405
            .|.....|:.|::.:     :..|.||:                .|::..:|.        ::|:
Mouse   750 QVTPKHWEEILQQSLWERVSTHVIENIYLPAAQTMNSGTFNTTVDIKLKQWTDKQLPNKAVEVAW 814

  Fly   406 EAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTAKMSRYPRLREETERIITTH-VRQREHSCKE 469
            |.:.:.....:.||..|..|.:..:|...|:..:.|..::....|::.|:|..: :..|..|.|:
Mouse   815 ETLQEEFSRFMTEPKGKEHDDIFDKLKEAVKEESIKRHKWNDFAEDSLRVIQHNALEDRSISDKQ 879

  Fly   470 QILLLIDFELAYMNTNHEDFIGFANAQNKSENANKTGTRQLGNQVIRKGHMVIQNLGIMKDIKLG 534
            |....|.|....:....:|          :|||                   |:|:         
Mouse   880 QWDAAIYFMEEALQGRLKD----------TENA-------------------IENM--------- 906

  Fly   535 RSGPLNVRFFSPSTGGSRPYWFVLTSESISWYKDEDEKEKKFMLPLDGLKLRDIEQGFMSMSRRV 599
                     ..|.......||...|.|.....:.::|.||.       ||:.|....::: |..:
Mouse   907 ---------IGPDWKKRWMYWKNRTQEQCVHNETKNELEKM-------LKVNDEHPAYLA-SDEI 954

  Fly   600 TFALFSPDGRNVYKDYKQLELSCETVEDV--ESWKASFL----------RAGVYPEKQETQENGD 652
            |....:.:.|.|       |:....::|.  :.::..||          |.|.|..::...:   
Mouse   955 TTVRKNLESRGV-------EVDPSLIKDTWHQVYRRHFLKTALNHCNLCRRGFYYYQRHFID--- 1009

  Fly   653 ESASEESSSDPQLERQVETIRNLVDSYMKIVTKTTRDMVPKAIMMLIINNAKDFI-----NGELL 712
               ||...:|..|..:::.:       :.|...|.|..:....:..:..|.|:.:     :||..
Mouse  1010 ---SELECNDVVLFWRIQRM-------LAITANTLRQQLTNTEVRRLEKNVKEVLEDFAEDGEKK 1064

  Fly   713 AHLYASGDQAQMMEE 727
            ..| .:|.:.|:.|:
Mouse  1065 VKL-LTGKRVQLAED 1078

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 79/257 (31%)
CrfC 73..>498 CDD:223771 102/474 (22%)
Dynamin_M 212..498 CDD:279383 64/321 (20%)
PH_dynamin 512..644 CDD:269958 24/143 (17%)
PH 552..638 CDD:278594 18/97 (19%)
GED 664..755 CDD:128597 12/69 (17%)
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
Opa1XP_006522717.2 DLP_1 427..701 CDD:206738 84/298 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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