DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and dnm1

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_031746176.1 Gene:dnm1 / 448130 XenbaseID:XB-GENE-986845 Length:887 Species:Xenopus tropicalis


Alignment Length:917 Identity:586/917 - (63%)
Similarity:699/917 - (76%) Gaps:89/917 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSLITIVNKLQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLI 65
            |:.||.:||:|||||:|:|.:..|||||||||||||||||||||||||||||||||||||||||:
 Frog     6 MEELIPLVNRLQDAFSSIGQNANLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLV 70

  Fly    66 LQLINGVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLI 130
            |||:|..||||||||.|||||:.|||||.|||.||||.||:|||||.:|||||||||:||||||:
 Frog    71 LQLVNSSTEYGEFLHCKGKKFTDFDEIRLEIEAETDRATGTNKGISPVPINLRVYSPNVLNLTLV 135

  Fly   131 DLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRT 195
            ||||:|||.:||||||||.||:.|:.||:.||.||:|||:|||:|||||||||:||||||:|:||
 Frog   136 DLPGMTKVPVGDQPVDIEFQIRDMLMQFVTKENCLVLAVSPANSDLANSDALKIAKEVDPKGLRT 200

  Fly   196 IGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAERKFFLSHPSY 260
            ||||||||||||||||||:|||||||||||||||||||||||:|:|||..|||||||||||||||
 Frog   201 IGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIQAALAAERKFFLSHPSY 265

  Fly   261 RHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQPGDASIKTKAML 325
            ||:|||:||||||:.|||||||||||||||||:|||.|:|::||||||:|:|:|.|.:.||||:|
 Frog   266 RHLADRMGTPYLQKALNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALL 330

  Fly   326 QMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKMACDEKELRREISFAIRN 390
            .|:||...|||:.|||||.. ::|.||||||:||||||||..||:|||..||||||||||:||:|
 Frog   331 LMVQQFAVDFEKRIEGSGDQ-IDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKN 394

  Fly   391 IHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTAKMSRYPRLREETERI 455
            |||||.||||||||||.|||:||..:|||.:||||:|:.||...||.||.|:|:||.||||.|||
 Frog   395 IHGIRTGLFTPDMAFETIVKKQIKKIKEPCLKCVDMVISELIGTVRQCTKKLSQYPHLREEMERI 459

  Fly   456 ITTHVRQREHSCKEQILLLIDFELAYMNTNHEDFIGFANAQNKSENANKTGTRQLGNQ----VIR 516
            :|||:|:||...|:|::||||.||:||||||||||||||||.:|...||  .:..|||    |||
 Frog   460 VTTHIREREGRTKDQVMLLIDIELSYMNTNHEDFIGFANAQQRSSQTNK--KKASGNQDEILVIR 522

  Fly   517 KGHMVIQNLGIMKDIKLGRSGPLNVRFFSPSTGGSRPYWFVLTSESISWYKDED----------- 570
            ||.:.|.|:||||                   |||:.||||||:|::|||||::           
 Frog   523 KGWLTINNIGIMK-------------------GGSKEYWFVLTAENLSWYKDDEEMEKKYMLPVD 568

  Fly   571 --------EKEKKFMLPLDGLKLRDIEQGFMSMSRRVTFALFSPDGRNVYKDYKQLELSCETVED 627
                    |||||:|||||.|||||||:|||| |:.: ||||:.:.|||||||:||||:|||.|:
 Frog   569 NLKLRDIKEKEKKYMLPLDNLKLRDIEKGFMS-SKHI-FALFNTEQRNVYKDYRQLELACETQEE 631

  Fly   628 VESWKASFLRAGVYPEK-------QETQENGDESASEESSSDPQLERQVETIRNLVDSYMKIVTK 685
            |:||||||||||||||:       .|::|||.:|...  |.|||||||||||||||||||.||.|
 Frog   632 VDSWKASFLRAGVYPERAGDKDKASESEENGSDSFMH--SMDPQLERQVETIRNLVDSYMAIVNK 694

  Fly   686 TTRDMVPKAIMMLIINNAKDFINGELLAHLYASGDQAQMMEESAESATRREEMLRMYRACKDALQ 750
            |.||::||.||.|:|.|.||||:.:|||:||:.|||..:||||||.|..|:|||:||||.|:||.
 Frog   695 TIRDLMPKTIMHLMIINTKDFIHSDLLANLYSCGDQNTLMEESAEQAQHRDEMLKMYRALKEALC 759

  Fly   751 IIGDVSMATVSSPLPPPVKNDWL-----PSGLDNPRLS----------PPSPGGVRGKPGPPAQS 800
            ||||:|..|:|:|:||||.:.||     |:|..:|..|          ||:..|.|| |.|    
 Frog   760 IIGDISTTTISTPMPPPVDDSWLQVQNMPTGRRSPTSSPTPQRRAPAVPPTRPGSRG-PAP---- 819

  Fly   801 SLGGRNPPLPPSTGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPMLPSRVSGAVGGAIVQQSGANR 865
                 .||.|.||...||.:|:||  ||.|.|.|      |||.:|||.:.|..|...:::.|:.
 Frog   820 -----GPPPPGSTLGSAPPVPSRP--GASPDPFG------PPPQIPSRPNRAPPGVPSRKAPASP 871

  Fly   866 YVPESMR 872
            ..|..:|
 Frog   872 TRPTIIR 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 193/238 (81%)
CrfC 73..>498 CDD:223771 322/424 (76%)
Dynamin_M 212..498 CDD:279383 211/285 (74%)
PH_dynamin 512..644 CDD:269958 83/154 (54%)
PH 552..638 CDD:278594 61/104 (59%)
GED 664..755 CDD:128597 63/90 (70%)
DUF4527 <758..819 CDD:291689 26/75 (35%)
Drf_FH1 <761..>846 CDD:283903 37/99 (37%)
dnm1XP_031746176.1 DYNc 6..245 CDD:197491 193/238 (81%)
Dynamin_M 216..502 CDD:395818 212/286 (74%)
PH_dynamin 520..648 CDD:269958 81/148 (55%)
GED 676..764 CDD:396682 60/87 (69%)
PHA03378 <771..872 CDD:223065 42/118 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 437 1.000 Domainoid score I552
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1128 1.000 Inparanoid score I226
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141880at33208
OrthoFinder 1 1.000 - - FOG0001563
OrthoInspector 1 1.000 - - otm49319
Panther 1 1.100 - - LDO PTHR11566
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X876
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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