DRSC/TRiP Functional Genomics Resources

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Protein Alignment shi and Opa1

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_725369.1 Gene:Opa1 / 36578 FlyBaseID:FBgn0261276 Length:972 Species:Drosophila melanogaster


Alignment Length:715 Identity:158/715 - (22%)
Similarity:278/715 - (38%) Gaps:156/715 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLITIVNKLQDAFT--SLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSG-IVTRRPL 64
            |||.:.:::.|..:  ..|..|...||::.|||.||:||:||||:.......||||| ::||.|:
  Fly   274 SLIDMYSEVLDELSGYDTGYTMADHLPRVVVVGDQSSGKTSVLESIAKARIFPRGSGEMMTRAPV 338

  Fly    65 ILQLINGVTEYGEFLHIKGK----KFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVL 125
            .:.|..|.....:|.....:    |.|...::|:::|..........|.:||..|.:.|..|.:.
  Fly   339 KVTLAEGPYHVAQFRDSDREYDLTKESDLQDLRRDVEFRMKASVRGGKTVSNEVIAMTVKGPGLQ 403

  Fly   126 NLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDP 190
            .:.|:||||:......|...|.:..|.||...::.....:||.:...:.|...|:...|..:.||
  Fly   404 RMVLVDLPGIISTMTVDMASDTKDSIHQMTKHYMSNPNAIILCIQDGSVDAERSNVTDLVMQCDP 468

  Fly   191 QGVRTIGVITKLDLMDEGTD---ARDILENKLLPLRR-GYIGVVNRSQKDIEGRKD--IHQALAA 249
            .|.|||.|:||:||.:|..|   .|.||..||.|::. ||..||..     .||||  |......
  Fly   469 LGRRTIFVLTKVDLAEELADPDRIRKILSGKLFPMKALGYYAVVTG-----RGRKDDSIDAIRQY 528

  Fly   250 ERKFF----LSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFK 310
            |..||    |.|.....|..::.:..|...::.:....:|:|:....|..:.....||   .|:|
  Fly   529 EEDFFKNSKLFHRRGVIMPHQVTSRNLSLAVSDRFWKMVRETIEQQADAFKATRFNLE---TEWK 590

  Fly   311 HFQP-----GDASIKTKAMLQMIQQL--------------------------------------- 331
            :..|     |...:..||..:::.::                                       
  Fly   591 NNFPRLRESGRDELFDKAKGEILDEVVTLSQISAKKWDDALSTKLWEKLSNYVFESIYLPAAQSG 655

  Fly   332 -QSDFE-----------------RTIEGSGSAL----VNTNELSGGAKINRIFHERLRFEIVKMA 374
             |:.|.                 :::|....||    ::..|.|..|:    .|:.: |:.:|.|
  Fly   656 SQNSFNTMVDIKLRQWAEQALPAKSVEAGWEALQQEFISLMERSKKAQ----DHDGI-FDQLKSA 715

  Fly   375 CDEKELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKE--PVIKCVDLVVQELSVVVRM 437
            ..::.:||. |:..:.|..:||      :....:..|.:...:|  ..:|.::..|....|....
  Fly   716 VVDEAIRRH-SWEDKAIDMLRV------IQLNTLEDRFVHDKQEWDSAVKFLESSVNAKLVQTEE 773

  Fly   438 CTAKMSRYPRLREETERIITTHVRQREHSCKEQILLLIDFELAYMNT-NHEDFIGF-ANAQNKSE 500
            ..|:|....::|..|.....|..:|:..|.|.::..::..:..::.| .|::.... .|.|..:.
  Fly   774 TLAQMFGPGQMRRITHWQYLTQDQQKRRSVKNELDKILKNDTKHLPTLTHDELTTVRKNLQRDNV 838

  Fly   501 NANKTGTRQLGNQVIRKGHMVIQNLGIMKDIKLGRSGPLNVRFFSPSTGGSR---------PYW- 555
            :.:....||....|.|| |.:.|.|...||.:..        ::..:..|:.         .:| 
  Fly   839 DVDTDYIRQTWFPVYRK-HFLQQALQRAKDCRKA--------YYLYTQQGAECEISCSDVVLFWR 894

  Fly   556 --------------FVLTSES----------ISWYKDEDEKE------KKFMLPLDGLKLRDIEQ 590
                          .|:..|:          :..:.|::||:      |:.:|..:.:|:|.|::
  Fly   895 IQQVIKITGNALRQQVINREARRLDKEIKAVLDEFSDDEEKKGYLLTGKRVLLAEELIKVRQIQE 959

  Fly   591  590
              Fly   960  959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 78/247 (32%)
CrfC 73..>498 CDD:223771 107/508 (21%)
Dynamin_M 212..498 CDD:279383 68/362 (19%)
PH_dynamin 512..644 CDD:269958 20/119 (17%)
PH 552..638 CDD:278594 11/79 (14%)
GED 664..755 CDD:128597
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
Opa1NP_725369.1 DLP_1 298..572 CDD:206738 86/278 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456940
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11566
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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