DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and mxc

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_001007285.1 Gene:mxc / 360145 ZFINID:ZDB-GENE-030721-7 Length:626 Species:Danio rerio


Alignment Length:574 Identity:173/574 - (30%)
Similarity:284/574 - (49%) Gaps:80/574 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQL--INGVT 73
            |.|...:|||...|:||.|||:|.||:|||||||...|. .||||.|||||.||||:|  |....
Zfish    28 LVDTLRALGVEKDLNLPAIAVIGDQSSGKSSVLEALSGV-ALPRGIGIVTRCPLILKLKKITRDK 91

  Fly    74 EYGEFLHIKGKKFSSFDEIRKE---IEDETDR----VTGSNKGISNIPINLRVYSPHVLNLTLID 131
            .:...|..|.:     .||.||   ||:...:    :.|:.:|||:..|.|.:.|..|.:|||||
Zfish    92 NWSGLLTYKDQ-----TEILKEPTGIENAVLKAQIALAGTGEGISHEMITLEIQSCDVPDLTLID 151

  Fly   132 LPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTI 196
            |||:.:||.|:||.|||:|||.:|.:||:::..:.|.|.|||.|:|.::|||:|..|||.|.||:
Zfish   152 LPGIARVATGNQPEDIEKQIKDLIEKFIKRQETISLVVVPANIDIATTEALKMASTVDPTGQRTL 216

  Fly   197 GVITKLDLMDEGTDARDI--LENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAERKFFLSHPS 259
            .::||.||:|.|.:...:  :.|:::.|.:||:.|..|.|:||..:.::.:||..||:||..||.
Zfish   217 CILTKPDLVDRGMEDTVVRTVNNEVIRLEKGYMIVKCRGQQDINDKLNLVEALEKERRFFDEHPQ 281

  Fly   260 YRHMAD--RLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFK---HFQPGDASI 319
            :..:.:  :...|.|.:.|.::|..||...:|.|:::::   :.|:|..|..|   ...|.|..|
Zfish   282 FSSLLEDGKATIPLLGQRLTEELVEHIAKNVPRLQNQIE---MKLQKTFERLKVLGESVPDDDEI 343

  Fly   320 --------KTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIV--KMA 374
                    |.:..:..:::::...|..::..                .|:| .::|.|.|  |..
Zfish   344 ELNNFLIKKLRQFMDALEEVKRVEEEPVKSD----------------TRVF-SKIRQEFVSWKHI 391

  Fly   375 CDEKELR--REISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCV----DLVVQELSV 433
            .|.|.::  .::...:|...|..:..|.....|..|::..:..|:||.:|.:    |:|...:..
Zfish   392 LDSKPIKMSTDLQEYVRTHRGKELPGFLNYGTFAGIIRMHVEDLEEPALKLLRNAKDIVHSSVGS 456

  Fly   434 VVRMCTAKMSRYPRL----REETERIITTHVRQREHSCKEQILLLIDFELAY----MNTNHEDFI 490
            :..:   ..:.||.|    :|..|:.:....:..|...:.|..|   .:..|    :.|||.:.:
Zfish   457 IANI---HFNGYPNLLLAVKEPIEKCLHEQFQNAEEKIRSQFKL---EKTVYCQDDLYTNHLNLL 515

  Fly   491 GFANAQNKSENANKTGTR-QLGNQVIRKGHMVIQNLGIMKDIKLGRSGPLNVRF 543
                   :.:|..:.|.. .|||..:|:....:.:...:...:|....||.|::
Zfish   516 -------RPKNTVRFGLEASLGNSELRETAFHLTSYLTIACERLANQIPLIVQY 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 107/239 (45%)
CrfC 73..>498 CDD:223771 126/462 (27%)
Dynamin_M 212..498 CDD:279383 65/316 (21%)
PH_dynamin 512..644 CDD:269958 6/32 (19%)
PH 552..638 CDD:278594
GED 664..755 CDD:128597
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
mxcNP_001007285.1 DLP_1 41..313 CDD:206738 116/277 (42%)
G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 50..57 4/6 (67%)
G2 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 75..77 1/1 (100%)
G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 151..154 2/2 (100%)
G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 220..223 2/2 (100%)
Dynamin_M 234..516 CDD:279383 65/314 (21%)
G5 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 252..255 0/2 (0%)
GED 532..619 CDD:280391 5/31 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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