DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and mxa

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_891987.2 Gene:mxa / 360142 ZFINID:ZDB-GENE-030721-5 Length:632 Species:Danio rerio


Alignment Length:764 Identity:195/764 - (25%)
Similarity:329/764 - (43%) Gaps:193/764 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLINGVTEYGE 77
            |...||||...|.||.|||:|.||:|||||||...|.. ||||||||||.||.|::|.  |:..:
Zfish    24 DNLRSLGVEKDLALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIR--TKDQD 85

  Fly    78 FLH--IKGKKF-SSFD---EIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLT 136
            ..|  |..|.: ..||   |:.|:|....|.:.|:..|||...|:|::.|.:|.:||||||||:.
Zfish    86 KWHGRISYKTYEEDFDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIA 150

  Fly   137 KVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVITK 201
            :||:..||.:|..|||::|.:|:.::..:.|.|.|.|.|:|.::||::|:..||.|.||:|::||
Zfish   151 RVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMAQAEDPDGERTLGILTK 215

  Fly   202 LDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAERKFFLSHPSYRHMA 264
            .||:|:||:..  ||:.|:::.|.:||:.|..|.||:|..:..:::|...|..||..||.:..:.
Zfish   216 PDLVDKGTEGTVVDIVHNEVIHLTKGYMIVRCRGQKEIMDQVTLNEATETESAFFKDHPHFSKLY 280

  Fly   265 DR--LGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQPGDASIKTKAMLQM 327
            :.  ...|.|...|..:|.:||:.:||.|.::::.::...:||:|.:.:..|.:.:.:....:..
Zfish   281 EEGFATIPKLAEKLTIELVHHIQKSLPRLEEQIETKLAETQKELEAYGNGPPSEPAARLSFFIDK 345

  Fly   328 IQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKMA--CD----------EKEL 380
            :.....|.....  :|..:..|.:|        :....||.|..|.:  .|          |||:
Zfish   346 VTAFNQDMLNLT--TGEDVKCTTDL--------LLFPELRQEFAKWSHILDRSGDSFNKKIEKEV 400

  Fly   381 -RREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTAKMSR 444
             ..|:.:..|.:.|     |.....||.:|:.||.||:||.:|    .::.:|.|||      .:
Zfish   401 DNYEVKYRGRELPG-----FINYKTFEGLVRDQIKLLEEPALK----TLKTVSDVVR------KK 450

  Fly   445 YPRLREETERIITTHVRQREHSCKEQILLLIDFELAYMNTNHEDFIGFANAQNKSENANKTGTRQ 509
            :.:|.:                |                    .||||.|.              
Zfish   451 FIQLAQ----------------C--------------------SFIGFPNL-------------- 465

  Fly   510 LGNQVIRKGHMVIQNLGIMKDIKLGRSGPLNVRFFSPSTGGSRPYWFVLTSESISWYKDEDEKEK 574
                                 :|:.::                                      
Zfish   466 ---------------------LKIAKT-------------------------------------- 471

  Fly   575 KFMLPLDGLKL--RDIEQGFMSMSRRVTFALFSPDGRNVYKDYKQ-LELSCETVEDVESWKASFL 636
                .::|:||  ..:.:..:....::...::|.||     .|.| |:.:.:.:|::|.      
Zfish   472 ----KIEGIKLNKESLAESMLKTQFKMELIVYSQDG-----TYSQSLKHAKDKLEEMEK------ 521

  Fly   637 RAGVYPEKQETQENGDESASEESSSDPQLERQVETIRNL---VDSYMKIVTKTTRDMVPKAIMML 698
                  |:.:.:......:|.:..:|..     .|:|.:   :.||..|.:|...|.:|..|..:
Zfish   522 ------ERPQPKIKLPLLSSFDLGTDNH-----ATLREMRLHLKSYYTIASKRLADQIPMVIRYM 575

  Fly   699 IINNAKDFINGELLAHLYASGDQAQMMEESAESATRREEML-RMYRACK 746
            ::..|...:...:|..|........:::|..:...:||.:| |..|..|
Zfish   576 LLQEAALELQRNMLQLLQDKDGVDNLLKEDCDIGQKRENLLSRQKRLMK 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 105/234 (45%)
CrfC 73..>498 CDD:223771 125/447 (28%)
Dynamin_M 212..498 CDD:279383 67/302 (22%)
PH_dynamin 512..644 CDD:269958 12/134 (9%)
PH 552..638 CDD:278594 11/88 (13%)
GED 664..755 CDD:128597 19/87 (22%)
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
mxaNP_891987.2 DLP_1 35..307 CDD:206738 112/274 (41%)
G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 44..51 4/6 (67%)
G2 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 69..71 1/1 (100%)
G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 145..148 2/2 (100%)
G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 214..217 2/2 (100%)
Dynamin_M 228..510 CDD:279383 76/424 (18%)
G5 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 246..249 0/2 (0%)
GED 547..632 CDD:280391 18/78 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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