DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and Mx2

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_599177.2 Gene:Mx2 / 286918 RGDID:628821 Length:659 Species:Rattus norvegicus


Alignment Length:620 Identity:192/620 - (30%)
Similarity:312/620 - (50%) Gaps:84/620 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQL--INGVT 73
            |.|:..:|||...|.||.|||:|.||:|||||||...|. .||||||||||.||:|:|  :|...
  Rat    53 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLNQGE 116

  Fly    74 EYGEFLHIKGKKFSSFDEIRKEIEDETD----------RVTGSNKGISNIPINLRVYSPHVLNLT 128
            |:      |||  .::|:|..|:.|.::          .:.|...|||:..|:|.|.||||.:||
  Rat   117 EW------KGK--VTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLT 173

  Fly   129 LIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGV 193
            ||||||:|:||:|:||.||.:|||::|..:|:|:..:.|.|.|:|.|:|.::||.:|::|||.|.
  Rat   174 LIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKVDPDGD 238

  Fly   194 RTIGVITKLDLMDEGTDAR--DILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAERKFFLS 256
            ||||::||.||:|.||:.:  |::.|.:..|::||:.|..|.|:||:.:..:.:||..|:.||..
  Rat   239 RTIGILTKPDLVDRGTEDKVVDVVRNLVCHLKKGYMIVKCRGQQDIQEQLSLAEALQKEQVFFKE 303

  Fly   257 HPSYRHMAD--RLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQPGDASI 319
            ||.:|.:.:  :...|.|...|..:|.:||..:||.|.:::::...:..:|::::....|.|.:.
  Rat   304 HPQFRALLEDGKATVPCLAERLTMELISHICKSLPLLENQIKESHQSTSEELQKYGADIPEDENE 368

  Fly   320 KTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFH------ERLRFEIVKMACDEK 378
            ||..:::.|.....|....:|  |..:|...|.....|:.:.|.      || .|:....|..::
  Rat   369 KTLFLIEKINAFNQDITAIVE--GEEIVREKECRLFTKLRKEFFLWSEEIER-NFQKGSDALYKE 430

  Fly   379 ELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTAKMS 443
            ....|:.:..|.:.|     |.....||.|::|||..|:||.::    ::.:::.:||.....:|
  Rat   431 VYTFEMQYRGRELPG-----FVNYKTFENIIRRQIKTLEEPAME----MLHKVTEIVRAAFTTVS 486

  Fly   444 RYP------------------RLREET--ERIITTHVRQRE-HSCKEQILLLIDFELAYMNTNHE 487
            ...                  ||.:||  |:.|..|.:..: ..|::||     :..|......|
  Rat   487 EKNFSEFFNLHRTTKSKLEDIRLEQETEAEKAIRLHFQMEQIIYCQDQI-----YRKALQKVREE 546

  Fly   488 DFIGFANAQNKSENANKTGTRQLGNQVIRKGHMVIQNLGIMKDIK---LGRSGPLNVRFFSPSTG 549
            :      |:.:.....|:.:.|..|........:.|:|...:...   :....||.:::|.....
  Rat   547 E------AEEEERKHGKSRSAQSPNLQTSSMDEIFQHLNAYRQEAHNCISSHIPLIIQYFILKMF 605

  Fly   550 GSRPYWFVL----TSESISWYKDE--DEKEKKFML 578
            ..:....:|    ..:|.||...|  |..||:..|
  Rat   606 AEKLQKGMLQLLQDKDSCSWLLKEKSDTSEKRRFL 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 112/242 (46%)
CrfC 73..>498 CDD:223771 138/465 (30%)
Dynamin_M 212..498 CDD:279383 73/316 (23%)
PH_dynamin 512..644 CDD:269958 15/76 (20%)
PH 552..638 CDD:278594 9/33 (27%)
GED 664..755 CDD:128597
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
Mx2NP_599177.2 DLP_1 66..338 CDD:206738 121/280 (43%)
G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 75..82 4/6 (67%)
G2 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 100..102 1/1 (100%)
G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 176..179 2/2 (100%)
G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 245..248 2/2 (100%)
Dynamin_M 258..544 CDD:395818 71/302 (24%)
G5 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01055 277..280 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 547..568 4/26 (15%)
GED 569..657 CDD:396682 14/72 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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