DRSC/TRiP Functional Genomics Resources

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Protein Alignment shi and msp1

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_596452.1 Gene:msp1 / 2539844 PomBaseID:SPBC1718.06 Length:903 Species:Schizosaccharomyces pombe


Alignment Length:566 Identity:151/566 - (26%)
Similarity:264/566 - (46%) Gaps:109/566 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LITIVNKLQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQL 68
            :|.|.|.|||...:   :..:.||.|.|:|.||:|||||||..||.:|||:||.:|||||:.|.|
pombe   244 MIEIRNILQDIQDN---NSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTL 305

  Fly    69 ING---VTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLI 130
            ::.   ...||||..::..|.:.|.:|:..:.| .:....|::|:.:.||.|.:|:.|:.||:||
pombe   306 VHSADTAIPYGEFSGVQLGKITDFSKIQHILTD-LNMAVPSSQGVDDNPIRLTIYASHIPNLSLI 369

  Fly   131 DLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRT 195
            ||||..::...|||.|::.:|.::..::|| |..:||||..|:.|||||.||:.::.|||.|:||
pombe   370 DLPGYIQIHSEDQPADLDMKISKLCEKYIR-EPNIILAVCAADVDLANSAALRASRRVDPLGLRT 433

  Fly   196 IGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQAL-----AAERKFFL 255
            |||:||:||:.. :.|..||.|...||..|||||::|...  .||....|.|     ..|..:|.
pombe   434 IGVVTKMDLVPP-SKAISILHNNNYPLHYGYIGVISRIVP--TGRFSAGQNLTDLVSTQENSYFS 495

  Fly   256 SHPSY--RHMADRLGTPYLQR----VLNQQLTNHIRDTLPGLRDKLQK-----------QMLTLE 303
            :|..:  ..:.:.||...|::    ||...::.:::.|...:|.:|::           ::||.:
pombe   496 THQQFADARIGNYLGIQSLRKCLINVLEYTMSKNLQHTADSIRTELEECNYQYKVQYNDRVLTAD 560

  Fly   304 KEVEE--------FKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINR 360
            ..:.|        ||.|.......:.:.:|:     .|..|:.::.........:::|..:|...
pombe   561 SYIAEGLDIFKAAFKEFTQKFGKSEVRDLLK-----SSLNEKVMDLLAERYWTDDDISNWSKHTN 620

  Fly   361 IFHERLRFEIVKMACDEKELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIA-----LLKEPV 420
            ...|..::::                               |.....:.:..:.     |:.:.:
pombe   621 ALDEHWKYKL-------------------------------DSCVSTLTRMGLGRVSTLLVTDSI 654

  Fly   421 IKCVDLVVQELSVVVRMCTAKMSRYPRLREETERIITTHVRQREHSCKEQILLLIDFELAYMNTN 485
            .||:|.:.:         .:..:.:|...:.........:|:|.|:..||:...:......:..|
pombe   655 SKCIDEITK---------ASPFADHPAAMQYIMNAAQDILRRRFHATSEQVENCVKPYKYDVEVN 710

  Fly   486 HEDF--------------IGFA-NAQNKSENANKTGTRQLGNQVIR 516
            .:::              :|.. :|..|.:||  .|:|:: |||::
pombe   711 DDEWKSSRGQAEKLLQRELGLCQSALEKIKNA--VGSRRM-NQVLQ 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 102/238 (43%)
CrfC 73..>498 CDD:223771 109/474 (23%)
Dynamin_M 212..498 CDD:279383 52/335 (16%)
PH_dynamin 512..644 CDD:269958 3/5 (60%)
PH 552..638 CDD:278594
GED 664..755 CDD:128597
DUF4527 <758..819 CDD:291689
Drf_FH1 <761..>846 CDD:283903
msp1NP_596452.1 CrfC 156..851 CDD:223771 151/566 (27%)
DLP_1 261..522 CDD:206738 106/265 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11566
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

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