DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shi and eat-3

DIOPT Version :9

Sequence 1:NP_001259588.1 Gene:shi / 45928 FlyBaseID:FBgn0003392 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_495986.3 Gene:eat-3 / 174476 WormBaseID:WBGene00001134 Length:964 Species:Caenorhabditis elegans


Alignment Length:852 Identity:187/852 - (21%)
Similarity:300/852 - (35%) Gaps:284/852 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LITIVNKLQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKDFLPRGSG-IVTRRPLILQ 67
            ::.::|:...::.:..     :||::.|||.|||||:||||........||||| ::||.|:.:.
 Worm   270 VLDLLNEYDSSYNTSD-----NLPRVVVVGDQSAGKTSVLEMVAQARIFPRGSGEMMTRAPVKVT 329

  Fly    68 LINGVTEYGEFLHIKGK----KFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLT 128
            |..|.....:|.....:    |.:...::|.|.|..........|.:||..|:|.|..|::..:.
 Worm   330 LSEGPYHVAQFRDSSREFDLTKETDLQQLRNETEVRMRNSVRDGKTVSNEVISLTVKGPNLPRMV 394

  Fly   129 LIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGV 193
            |:||||:......|...:.:..|.:|....:.....:||.:...:.|...|:...|...:||.|.
 Worm   395 LVDLPGVISTVTADMARETKDDIIRMSKAHMENPNAIILCIQDGSVDAERSNVTDLVSSIDPSGK 459

  Fly   194 RTIGVITKLDLMDEGTDARD----ILENKLLPLRR-GYIGVV----NRSQKDIEGRKDIHQALAA 249
            |||.|:||:|:.::.....|    |||.||.|::. ||.|||    |.|....|.||       .
 Worm   460 RTILVLTKVDMAEKNLANPDRIKKILEGKLFPMKALGYFGVVTGRGNSSDSIDEIRK-------Y 517

  Fly   250 ERKFFLSHPSYRHMADRLGTPYLQRVLNQQLT------NHIRDTLPGLRDKLQKQMLTLEKEVEE 308
            |..||.:....|   |.:..|......|..|.      ..:||::....|..:.....||.|.: 
 Worm   518 EENFFSTSQLLR---DGVLKPSQMTTRNMSLAVSDCFWRMVRDSIESQTDAFRAAKFNLEAEWK- 578

  Fly   309 FKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKM 373
             .||             ..|:||                |.:||          :::.|.||:  
 Worm   579 -NHF-------------LRIRQL----------------NRDEL----------YDKARGEIL-- 601

  Fly   374 ACDEKELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMC 438
              ||          |.|:..|.|                                          
 Worm   602 --DE----------IVNLSLIGV------------------------------------------ 612

  Fly   439 TAKMSRYPRLREETERI--------ITTHVRQREHSCKEQILLLIDFELAYMNTNHEDFIGFANA 495
                       ||.|::        |::||       .:|||:.                  |.|
 Worm   613 -----------EEWEKLLQDKLWSGISSHV-------FDQILMP------------------AYA 641

  Fly   496 QNKSENANKTGTRQLGNQVIRKGHMVIQNLGIMKDIKLGRSGPLNVRFFSPSTGGSRPYWFVLTS 560
            .:.|.:.|.|                       .||||.......:...|..||     |..| .
 Worm   642 SSSSGSFNTT-----------------------VDIKLKHFADKQLAQKSIETG-----WDTL-K 677

  Fly   561 ESISWYKDEDEKEKKFMLPL-DGLKLRDIEQGFMSMSRRVTFALFSPDGRNVYKDY-KQLELSC- 622
            |......::|.:.||...|: |.||...||:           |:.:....:...|| :.::|:. 
 Worm   678 EVFFRQINQDARTKKDHDPVFDALKEAVIEE-----------AMLTHGWDDKAMDYLRVIQLNAM 731

  Fly   623 --ETVEDVESWKA--SFLR-------AGVYPEKQETQENGDESAS-------------------E 657
              ..|:|..||.|  :||.       |.|  :||.|.:.|...||                   :
 Worm   732 EDRAVQDKRSWDAACNFLHKAASERLAAV--KKQLTDDRGPGWASKWLMWKTPTADNHYSCVIQD 794

  Fly   658 ESSS----DPQ------------LERQVETIRNLVDSYMKIVTKTTRDMVPKAIMMLIINNAKDF 706
            |..|    ||:            :.|.:|| :.:::...:.:.|..:.:..|..:..|||::||.
 Worm   795 ELYSILGADPEHKQALTDDDITVIRRNIET-KGVLEVPTESIRKQWKLVFKKHFLERIINSSKDC 858

  Fly   707 INGELLAHLYASGDQAQMME-ESAESAT-----RREEMLRMYRACKDALQIIGDVSMATVSSPLP 765
            ::   :..:|..|    |:| :..:..|     |.::|:.:  .|....|.|.:.....:...: 
 Worm   859 LS---MYQMYRQG----MIEGQDIDCQTIVLFYRIQKMVNL--TCNALRQQITNTEHRRLEKEI- 913

  Fly   766 PPVKNDW 772
            ..|.:||
 Worm   914 KEVLDDW 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shiNP_001259588.1 DYNc 1..240 CDD:197491 75/249 (30%)
CrfC 73..>498 CDD:223771 94/451 (21%)
Dynamin_M 212..498 CDD:279383 59/308 (19%)
PH_dynamin 512..644 CDD:269958 32/145 (22%)
PH 552..638 CDD:278594 23/99 (23%)
GED 664..755 CDD:128597 20/108 (19%)
DUF4527 <758..819 CDD:291689 3/15 (20%)
Drf_FH1 <761..>846 CDD:283903 3/12 (25%)
eat-3NP_495986.3 Smc <186..>278 CDD:224117 1/7 (14%)
DLP_1 286..560 CDD:206738 86/283 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0699
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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