DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and GLRA3

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_006520.2 Gene:GLRA3 / 8001 HGNCID:4328 Length:464 Species:Homo sapiens


Alignment Length:463 Identity:160/463 - (34%)
Similarity:232/463 - (50%) Gaps:89/463 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL---RLPENMTQEYRL 101
            ||....|..:|.|..|..::.:....||.|.:|.|..::|..|.|.|.||   ..|::...    
Human    57 YDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLD---- 117

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
            |:...|.::|:||.||.|.|...|..:|..|..:.::|:..:||.::|||.|||.|:...:|.|.
Human   118 LDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDV 182

  Fly   167 QECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALIRNETAD---CTQVYSTGNFTCLEV 228
            |.|.:|:||..:|.:||||:|....|:.|.|.:.|||..|  .|..|   ||:.|:||.|||:||
Human   183 QTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLL--KEEKDLRYCTKHYNTGKFTCIEV 245

  Fly   229 VFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPV 293
            .|.|:|::.||:...|||:.:|||:|||||||..:||||||.||:|::||::||.:.|::|||.|
Human   246 RFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKV 310

  Fly   294 SYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSN 358
            ||:||:|.:|:||.:|||.||:||..:|.|                                   
Human   311 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV----------------------------------- 340

  Fly   359 STASKQQATML-----------PLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDA-DGPWI 411
               |:|...:|           ..|.||..:...:.||:.::|  .:.|...:.|.|.| ||   
Human   341 ---SRQHKELLRFRRKRKNKTEAFALEKFYRFSDMDDEVRESR--FSFTAYGMGPCLQAKDG--- 397

  Fly   412 PRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQER---LKRAIYIDRSSRVLFPALFASL 473
                    :|        |..|..|...:||   :|.:.|   :.||..||..||..||..|...
Human   398 --------MT--------PKGPNHPVQVMPK---SPDEMRKVFIDRAKKIDTISRACFPLAFLIF 443

  Fly   474 NGIYWCVF 481
            |..||.::
Human   444 NIFYWVIY 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 160/461 (35%)
Neur_chan_LBD 38..235 CDD:280998 74/200 (37%)
Neur_chan_memb 243..>334 CDD:280999 48/90 (53%)
GLRA3NP_006520.2 LIC 12..451 CDD:273305 160/461 (35%)
Strychnine-binding. /evidence=ECO:0000269|PubMed:26416729 235..240 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.930

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