DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabrg3

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_077346.3 Gene:Gabrg3 / 79211 RGDID:621735 Length:467 Species:Rattus norvegicus


Alignment Length:501 Identity:149/501 - (29%)
Similarity:221/501 - (44%) Gaps:116/501 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 QSLAITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL 89
            |...:|.||.:.::.|||...|....:||::...:.|..:..:...:|.|..|:||||||.|.||
  Rat    43 QDTDVTLILNKLLREYDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRL 107

  Fly    90 RLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLS 154
            |.  |.|.:...|..:.:..:|.||:.|:|:|:.....:|.||..:.::.|..|||.::||:...
  Rat   108 RF--NSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAE 170

  Fly   155 CIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDE-NIELPQVAL--IRNETADCTQ 216
            |.:....:|.|...|.|...|..:..:::|::|...:....|: :..|.|...  :||.|...|.
  Rat   171 CQLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTT 235

  Fly   217 VYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLST 281
              |.|::..:.:.|.|.||:.|:...||||..:.|::||||||||.:|.|||.|||:|::||::|
  Rat   236 --SAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTT 298

  Fly   282 QHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPK 346
            ....::.|||.|||:.|:|.|::||.:|||.|||||..:|...|   ..||              
  Rat   299 LSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSS---CRKP-------------- 346

  Fly   347 KEGEGAPPGGSNSTASKQQATML-PLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDADGPW 410
                         |..|::.::| |                       .:||            |
  Rat   347 -------------TIRKKKTSLLHP-----------------------DSTR------------W 363

  Fly   411 IPRQESRIILTPTIAPP--------PPPPQPAAPEPELPKPKL--TPAQERL------------- 452
            ||   .||.|.   ||.        ||||........:...:.  |...|.|             
  Rat   364 IP---DRISLQ---APSNYSLLDMRPPPPVMITLNNSMYWQEFEDTCVYECLDGKDCQSFFCCYE 422

  Fly   453 --------KRAIYIDRS-----SRVLFPALFASLNGIYWCVFYEYL 485
                    :..|:||.|     |||.||..|...|.:|| |.|.||
  Rat   423 ECKSGSWRRGRIHIDVSELDSYSRVFFPTSFLLFNLVYW-VGYLYL 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 143/489 (29%)
Neur_chan_LBD 38..235 CDD:280998 57/199 (29%)
Neur_chan_memb 243..>334 CDD:280999 47/90 (52%)
Gabrg3NP_077346.3 Neur_chan_LBD 48..253 CDD:280998 61/208 (29%)
LIC 50..464 CDD:273305 144/489 (29%)
Neur_chan_memb 260..461 CDD:280999 79/271 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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