DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gabrg2

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_031754595.1 Gene:gabrg2 / 779514 XenbaseID:XB-GENE-5949005 Length:505 Species:Xenopus tropicalis


Alignment Length:482 Identity:141/482 - (29%)
Similarity:222/482 - (46%) Gaps:97/482 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPE 93
            :|.||...:|.||....|....:||:::..:.|..:..::..:|.|..|:||||||.|.||:.  
 Frog    96 VTSILNGLLKGYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKF-- 158

  Fly    94 NMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMN 158
            |.|.:...|..:.:..:|.||:||:|:|......:|.||..:.::.|..:||.::||:...|.:.
 Frog   159 NSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQ 223

  Fly   159 FAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVD-ENIELPQVALI--RNETADCTQVYST 220
            ...:|.|...|.|:..|..:..:::|:||..::..|.| .:..|.|.:.:  ||.|.:...  ::
 Frog   224 LHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVGDVRSWRLYQFSFVGLRNTTEEVKT--TS 286

  Fly   221 GNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAK 285
            |::..:.|.|.|.||:.|:...||||..:||::|||||||..:|.|||.:||:|::||::|....
 Frog   287 GDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTI 351

  Fly   286 SQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGE 350
            ::.|||.|||:.|:|.|:|||.:|||.|||||..::..:|:.          ||......||:..
 Frog   352 ARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFVSNR----------KPSKDKEKKKKNP 406

  Fly   351 -------GAP-----PGGSNSTASKQQATMLPLADEK--IEKIEK--------IFDEMTKNRRIV 393
                   .||     |  .::|.....||.|...||:  .|.::.        .|::.       
 Frog   407 LLWMFSFKAPTIDIRP--RSATIQMNNATHLQERDEEYGYECLDGKDCASFFCCFEDC------- 462

  Fly   394 TTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYI 458
                        ..|.|   :..||.:                                 |...|
 Frog   463 ------------RTGAW---RHGRIHI---------------------------------RVAKI 479

  Fly   459 DRSSRVLFPALFASLNGIYWCVFYEYL 485
            |..||:.||..|...|.:|| |.|.||
 Frog   480 DSYSRIFFPTAFCLFNLVYW-VSYLYL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 136/474 (29%)
Neur_chan_LBD 38..235 CDD:280998 57/199 (29%)
Neur_chan_memb 243..>334 CDD:280999 44/90 (49%)
gabrg2XP_031754595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.