DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gabrr2a

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_017207163.1 Gene:gabrr2a / 751659 ZFINID:ZDB-GENE-060825-164 Length:475 Species:Danio rerio


Alignment Length:529 Identity:146/529 - (27%)
Similarity:244/529 - (46%) Gaps:112/529 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QIIILVICT----ICMKHYAKGEFQQSLAI------TDIL--PEDIKRYDK-------------- 42
            |::|||:..    .|...:|..|.:.:.|:      |.:.  |.|:.:..:              
Zfish     7 QLLILVLFLGSFGECRNKHATRERRWTGAVETQKHGTSLAKKPPDVTKSRRLKTEQLLKVDDHDF 71

  Fly    43 -MRPPKKEGQPTI-VYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLP----ENMTQEYRL 101
             |||  ..|.|.| |...|.|..||||.|..|.:...::....|||.||...    ::||.:.||
Zfish    72 TMRP--AFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFTSSTNKSMTFDGRL 134

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
                 :|.:|.||.||.::|.......|..|..:.::.|..:||.:::|:..:|.|:|:.:|.|:
Zfish   135 -----VKKIWVPDVFFVHSKRSFIHDTTTENIMLRVFPDGHVLYSLRVTVTAACNMDFSRFPLDS 194

  Fly   167 QECKLQMESLSHTTDDLIFQW-DPTTPLVVDENIELPQVALIRNETADCTQVY-STGNFTCLEVV 229
            |.|.|::||.::|.:||:..| :....|.:||.|.|.|..:.:..|......| |||.:..|.:.
Zfish   195 QTCSLELESYAYTDEDLMLYWKNGDESLSIDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYIN 259

  Fly   230 FTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVS 294
            |||:|.:.:::..||.|..::|::|||||||...|.||||:||:|::||:||......:|:|.||
Zfish   260 FTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVS 324

  Fly   295 YLKAVDAFMSVCTVFVFMALMEYCLINIV----------LSDTPIPKPMAYP-------PKPVAG 342
            |:||||.::.|..||||::::||..:|.:          |.|..: :..:.|       .:.:..
Zfish   325 YIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERRERKLRDRAV-REQSLPCTCGMSHTRTMML 388

  Fly   343 DGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDAD 407
            ||...|.:      :||.|...:|   |:..|::                               
Zfish   389 DGTYSEAD------TNSLAGYTEA---PMVHEEV------------------------------- 413

  Fly   408 GPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALFAS 472
               :|.::..:::..::          :.|....|.|...|...::....||:.||::||..:..
Zfish   414 ---VPEKQEHMVVHLSV----------SSESTNTKKKGIRALRIMQNTHAIDKYSRMIFPGAYII 465

  Fly   473 LNGIYWCVF 481
            .|.|||.|:
Zfish   466 FNLIYWSVY 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 136/490 (28%)
Neur_chan_LBD 38..235 CDD:280998 66/218 (30%)
Neur_chan_memb 243..>334 CDD:280999 42/100 (42%)
gabrr2aXP_017207163.1 LIC 43..474 CDD:273305 137/491 (28%)
Neur_chan_LBD 60..266 CDD:280998 67/212 (32%)
Neur_chan_memb 273..471 CDD:280999 65/251 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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