DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gabrd

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_700099.5 Gene:gabrd / 571422 ZFINID:ZDB-GENE-081105-170 Length:459 Species:Danio rerio


Alignment Length:488 Identity:139/488 - (28%)
Similarity:210/488 - (43%) Gaps:101/488 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TDI-------LPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDH 87
            |||       |.:.:|.|.:...|...|.|..|...:.|..:|.|.|.:|.|...||..|:|:|.
Zfish    35 TDIEISWLPNLDDLMKGYARNFRPGIGGPPVNVAMAIEVASIDHISEANMEYTMTVFLRQSWRDD 99

  Fly    88 RLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLK 152
            ||..  |.|.:...|:..::..:|.||:|..||||..|..:|:.|..:.|..|..|||..::|..
Zfish   100 RLSY--NHTNKTLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSSRITST 162

  Fly   153 LSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVD-ENIELPQVALIRNE-TADCT 215
            ::|.|:...||.|.|||.|.:||..::::|:::.|..:..|:.. :.:||.|..:.... ..:..
Zfish   163 VACDMDLTKYPMDEQECMLDLESYGYSSEDIVYHWSESQKLIHGLDKLELSQFTITDYRFVTEMM 227

  Fly   216 QVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLS 280
            ...|.|.|..|.:.|.|:|....|:..:|:|:.::|.||||||||...|.||||:||:|::||::
Zfish   228 NFKSAGRFPRLSLRFQLRRNRGVYIIQSYMPSILLVAMSWVSFWISQSAVPARVSLGITTVLTMT 292

  Fly   281 TQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGP 345
            |....::||||..|.:||:|.:..:|.||||.||:||...:....         |..|..|....
Zfish   293 TLMVSARSSLPRASAIKALDVYFWICYVFVFAALIEYAFAHYNAD---------YSKKEKAKVKT 348

  Fly   346 KKEGEGAPPGG-------SNSTASKQQATMLPLADEKIEKIEKIFD---------EMTKNRRIVT 394
            .|..|.....|       |.|.|...|..::   ..:..:..:..|         |.|:.|.  .
Zfish   349 NKNAESMVKNGKQAMVLFSLSVAGMNQGLLI---SNRQSRSHRASDAAAAAADPHEETETRS--A 408

  Fly   395 TTRRVVR-----------PPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPA 448
            |:||..:           .|:|||                                         
Zfish   409 TSRRAQKESSEEKKCCKCKPIDAD----------------------------------------- 432

  Fly   449 QERLKRAIYIDRSSRVLFPALFASLNGIYWCVF 481
                    .||..:|.:||..||.:|.|||..:
Zfish   433 --------TIDIYARAVFPFTFAVVNVIYWVAY 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 138/485 (28%)
Neur_chan_LBD 38..235 CDD:280998 62/198 (31%)
Neur_chan_memb 243..>334 CDD:280999 39/90 (43%)
gabrdXP_700099.5 LIC 45..457 CDD:273305 136/476 (29%)
Neur_chan_LBD 45..247 CDD:280998 63/203 (31%)
Neur_chan_memb 256..454 CDD:280999 69/260 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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