DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gabra6b

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002667403.3 Gene:gabra6b / 559693 ZFINID:ZDB-GENE-080815-1 Length:444 Species:Danio rerio


Alignment Length:470 Identity:139/470 - (29%)
Similarity:210/470 - (44%) Gaps:84/470 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPE 93
            ||.||...:..||....|...|..|.|...:.|.....:.:..|.|..||||.|||.|.||:. |
Zfish    31 ITRILDRLLDGYDNRLRPGFGGPVTEVKTDIFVTSFGPVSDVEMEYTMDVFFRQTWIDDRLKF-E 94

  Fly    94 NMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMN 158
            ...:..||..: .:..:|.||:||:|.|......||.||....:.::.||||.::||:...|.|.
Zfish    95 GPIEILRLNNL-MVSKIWTPDTFFRNGKRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMR 158

  Fly   159 FAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPL----VVDENIELPQVALIRNETADCTQVYS 219
            ...:|.|...|.|:..|.::...::::.| ...||    |..|:..|.|..|| .:|....::.|
Zfish   159 LINFPMDGHSCPLKFGSYAYPMSEIVYTW-KKGPLFSVEVPQESSSLLQYDLI-GQTVSSERLKS 221

  Fly   220 -TGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 283
             ||.:..:.|.|.|:|::.:::..||||..|.||::.|||||..|:.|||...|:|::||::|..
Zfish   222 NTGEYIVMTVYFHLQRKMGFFLIQTYIPCIMTVILAQVSFWIDKESVPARTVFGITTVLTMTTLS 286

  Fly   284 AKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIV--------LSDTPIPKPMAYPPKPV 340
            ..::.|||.|||..|:|.|::||..|||.||:|:..:|..        |....|.:..|      
Zfish   287 ISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFSTLQANKELRRANIARAAA------ 345

  Fly   341 AGDGPKKEGEGA----PPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVR 401
            |....:.:|||.    .|||                     .::|..:.:::.    :.|.|..|
Zfish   346 AAAAARSDGEGVLNPLDPGG---------------------VLKKRMNSLSQR----SATDRFSR 385

  Fly   402 PPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLF 466
            |. .:|   ..:|.|.:                            ||...|.....||:.||:||
Zfish   386 PS-QSD---FHQQGSAV----------------------------PANNMLIGTSIIDKYSRILF 418

  Fly   467 PALFASLNGIYWCVF 481
            |..|.:.|.:||.|:
Zfish   419 PLSFGAFNLVYWIVY 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 136/466 (29%)
Neur_chan_LBD 38..235 CDD:280998 62/201 (31%)
Neur_chan_memb 243..>334 CDD:280999 41/98 (42%)
gabra6bXP_002667403.3 Neur_chan_LBD 32..239 CDD:280998 66/210 (31%)
LIC 33..433 CDD:273305 136/466 (29%)
Neur_chan_memb 246..430 CDD:280999 69/246 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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