DRSC/TRiP Functional Genomics Resources

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Protein Alignment ort and nAChRalpha4

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster


Alignment Length:337 Identity:66/337 - (19%)
Similarity:128/337 - (37%) Gaps:64/337 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IKRYDKM-RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYR 100
            :..|:|: ||.........|...:.:..|..::..:.....:::..|:|.|::||..........
  Fly    20 LSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVH 84

  Fly   101 LLEVDWLKNMWRPD-SFFKNAK---SVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAI 161
            :|.|. ..::|||| ..:.||.   .||..|...      :|.:..:.:......|.||.::...
  Fly    85 MLHVP-SDHIWRPDIVLYNNADGNFEVTLATKAT------IYSEGLVEWKPPAIYKSSCEIDVEY 142

  Fly   162 YPHDTQECKLQMES---------LSHTTDD----------------LIFQWDPTTPLVVDENIEL 201
            :|.|.|.|.|:..|         |.|..:.                :..:||            :
  Fly   143 FPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEFYMSVEWD------------I 195

  Fly   202 PQVALIRNET--ADCTQVYSTGNFTCLEVVF--TLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKP 262
            .:|..:|||.  ..|.:.|       |::.|  |::|:.::|..|..||...|..::.::|:: |
  Fly   196 LEVPAVRNEKFYTCCDEPY-------LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL-P 252

  Fly   263 EAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDT 327
            ..:..:|||.::.|::|..........:||.|   .|...:....:|..:.:.....:.:|:.:.
  Fly   253 SDSGEKVTLSISILISLHVFFLLVVEIIPPTS---LVVPLLGKYLIFAMILVSISICVTVVVLNV 314

  Fly   328 PIPKPMAYPPKP 339
            ....|..:...|
  Fly   315 HFRSPQTHKMAP 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 66/337 (20%)
LGIC_ECD_HisCl 51..235 CDD:349793 41/216 (19%)
Cys-loop 155..169 CDD:349793 4/13 (31%)
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:455710 66/337 (20%)
LGIC_ECD_nAChR_proto_alpha-like 11..229 CDD:349832 46/234 (20%)
Cys-loop 136..150 CDD:349832 4/13 (31%)

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