DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and SecCl

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster


Alignment Length:551 Identity:125/551 - (22%)
Similarity:222/551 - (40%) Gaps:122/551 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VFQIIILVICTI------------CMKHYAKGEFQQSLAITDILPEDIKRYDKMRPP---KKEGQ 51
            :|.|.::::.:|            |......|..||:..|..:  ..:.|||::..|   ..:|:
  Fly     9 IFWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRL--THVCRYDRLERPFEYDSDGK 71

  Fly    52 --PTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL-----RLPENMTQEYRLLEVDWLKN 109
              |.:|...:.|..|.:::.:.:.:.........::|.||     ...:|:..:..|.|     .
  Fly    72 RLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSE-----R 131

  Fly   110 MWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQME 174
            :|.|..||.|.:..:.......:....|..:..::...::...|.|.|||..:|.|.|.|...:|
  Fly   132 LWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLE 196

  Fly   175 SLSHTTDDLIFQWDPTTPLVVDENIELPQ---------VALIRNETADCTQVYSTGNFTCLEVVF 230
            |..:.|.|||.:|:|.||:..|..:.|.:         ..:::::..:.......||::.|....
  Fly   197 SWMYNTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTV 261

  Fly   231 TLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSY 295
            .|||.:.:|:.:.|:|:.|||.:||||||::.:|:|.|:.||.:::|:..|..:....:||.|||
  Fly   262 NLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSY 326

  Fly   296 LKAVDAFMSVCTVFVFMALMEYCLIN-----------------IVLSDTPIPKPMAYPPKPVAGD 343
            :|..:.:...||.|:|.:|:|:..:|                 .::..|..|:|..   :.:.|.
  Fly   327 IKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPAR---RQIGGS 388

  Fly   344 --------------------GPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIE--KIFDEM 386
                                ...:.|.|....|.|:..:..  ..||:...:..:.:  .|....
  Fly   389 LSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVH--PNLPIIRTECAEADTVSICSAR 451

  Fly   387 TKNRRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQER 451
            |.|..||         .:|.|....|         ||..                  .:||.:  
  Fly   452 TNNDHIV---------DVDKDKKDTP---------PTFT------------------TMTPQE-- 478

  Fly   452 LKRAIYIDRSSRVLFPALFASLNGIYWCVFY 482
              .|::|||.||.||||:|.:.|.:||...|
  Fly   479 --IAMWIDRRSRFLFPAMFLAFNALYWTFVY 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 116/507 (23%)
Neur_chan_LBD 38..235 CDD:280998 47/215 (22%)
Neur_chan_memb 243..>334 CDD:280999 34/107 (32%)
SecClNP_001261986.1 LIC 43..505 CDD:273305 119/513 (23%)
Neur_chan_LBD 44..267 CDD:280998 50/229 (22%)
Neur_chan_memb 275..503 CDD:280999 65/272 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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