DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and lgc-36

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001023766.1 Gene:lgc-36 / 3565335 WormBaseID:WBGene00008551 Length:536 Species:Caenorhabditis elegans


Alignment Length:537 Identity:124/537 - (23%)
Similarity:222/537 - (41%) Gaps:128/537 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVFQIIILVICTIC----------MKHYAKGEF----------QQSLA--ITDILPEDIKRYDK- 42
            ::...|..:|.::|          :|..:.|.|          ::.:|  :|.:|...:|.||: 
 Worm    12 LIIFFISTIILSVCGNELKFTIENVKFRSPGSFRIKRTVHPKREKGVAQNVTHLLNNVLKNYDQH 76

  Fly    43 MRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVD-- 105
            .||....|:||.||..:.:..:..:.:...||..:.:|.|.|.|.||.. .|....:|.|.:.  
 Worm    77 FRPGFNSGKPTKVYIDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHF-NNSGIGFRQLSLSMA 140

  Fly   106 WLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECK 170
            .|..:|:||::|.|........:|..|..:.|..|.||||..::|:|..|.|:.:.||.|.|.|:
 Worm   141 MLDKIWKPDTYFWNGAGSYVHGITTSNRLVRLEPDGTILYSSRITVKAKCQMDMSRYPLDKQACR 205

  Fly   171 LQMESLSHTTDDLIFQWDPTTPLVVDEN---------IELPQVALIRNETADCTQVYSTGNFT-- 224
            |.:.|.::::|::.::|    .::.|:|         .:|||.:|      ...:||...|.|  
 Worm   206 LVIGSYAYSSDEVQYKW----RIMGDDNGVKIDYESIADLPQFSL------SGFKVYKPANITRD 260

  Fly   225 ----CLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAK 285
                .|||.|...|...|::.|.|:|..::|::.||:|:.|.||...|:.:|:|::||:......
 Worm   261 KEYSALEVRFYFDRHFGYFLMNFYVPCALVVLLCWVAFFTKREATAERIGIGITNVLTIVLISMD 325

  Fly   286 SQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGE 350
            |:|..|.|....|::.|:.:|.:...:.::|:.:::             |..|...||...:|.|
 Worm   326 SKSDSPKVDSPTALEVFIWICYLTHLICMVEFTVVH-------------YHTKYNTGDPEIQEVE 377

  Fly   351 GAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRR--------VVRPPLDAD 407
                                  .|::.:|.|...:.|.||....|.||        :.||     
 Worm   378 ----------------------RERLRQIIKQIPKNTNNRATEPTFRRRNAALPVSIARP----- 415

  Fly   408 GPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALFAS 472
               :|.:..|.:                   .:.:||.:...|.::....|..........:.:|
 Worm   416 ---LPNKTKRFM-------------------SVRQPKKSEQTESIQLMRKISNMESTTHNEVESS 458

  Fly   473 LN-------GIYWCVFY 482
            ||       .:.|.::|
 Worm   459 LNLESIRQENVGWRLYY 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 115/482 (24%)
Neur_chan_LBD 38..235 CDD:280998 62/214 (29%)
Neur_chan_memb 243..>334 CDD:280999 22/90 (24%)
lgc-36NP_001023766.1 LIC 48..520 CDD:273305 118/501 (24%)
Neur_chan_LBD 63..272 CDD:280998 64/219 (29%)
Neur_chan_memb 284..511 CDD:280999 50/254 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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