DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and glra1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_005173152.1 Gene:glra1 / 30676 ZFINID:ZDB-GENE-991117-1 Length:459 Species:Danio rerio


Alignment Length:490 Identity:151/490 - (30%)
Similarity:229/490 - (46%) Gaps:119/490 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DILPEDIKRYD-KMRP------PK--------KEGQPTIVYFHVTVMGLDSIDENSMTYVADVFF 80
            |.|...:..|| ::||      |:        |:|.|..|..::.:....||.|.:|.|..::|.
Zfish    39 DKLMGKVSGYDARIRPNFKVVDPQGSKSDGTHKKGPPVNVTCNIFINSFGSIAETTMDYRVNIFL 103

  Fly    81 AQTWKDHRL---RLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKT 142
            .|.|.|.||   ..|::...    |:...|.::|:||.||.|.|...|..:|..|..:.:.|:..
Zfish   104 RQQWNDPRLAYSEYPDDSLD----LDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGN 164

  Fly   143 ILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALI 207
            :||.:::||.|:|.|:...:|.|.|.|.:|:||..:|.:||||:||....:.|.:.:.|||  .|
Zfish   165 VLYSIRITLVLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKGAVQVADGLTLPQ--FI 227

  Fly   208 RNETAD---CTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARV 269
            ..|..|   ||:.|:||.|||:|..|.|:|::.||:...|||:.:|||:|||||||..:||||||
Zfish   228 LKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARV 292

  Fly   270 TLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSD----TPIP 330
            .||:|::||::||.:.|::|||.|||:||:|.:|:||.:|||.||:||..:|.:...    ....
Zfish   293 GLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIARQHKELLRFQ 357

  Fly   331 KPMAYPPKPVAGDG--------------PKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEK 381
            :...:..:..||||              ..|:|.......:|:..|    |..|  ::.:|::.|
Zfish   358 RRRRHLKEDEAGDGRFSFAAYGMGPACLQAKDGMAIKGNNNNAPTS----TNPP--EKTVEEMRK 416

  Fly   382 IFDEMTKNRRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLT 446
            :|                                                               
Zfish   417 LF--------------------------------------------------------------- 418

  Fly   447 PAQERLKRAIYIDRSSRVLFPALFASLNGIYWCVF 481
                 :.||..||..|||.||.:|...|..||..:
Zfish   419 -----ISRAKRIDTVSRVAFPLVFLIFNIFYWITY 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 151/488 (31%)
Neur_chan_LBD 38..235 CDD:280998 73/217 (34%)
Neur_chan_memb 243..>334 CDD:280999 47/94 (50%)
glra1XP_005173152.1 LIC 7..448 CDD:273305 151/488 (31%)
Neur_chan_LBD 38..259 CDD:280998 76/225 (34%)
Neur_chan_memb 266..445 CDD:280999 71/252 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.030

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