DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabra6

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_068613.1 Gene:Gabra6 / 29708 RGDID:61861 Length:453 Species:Rattus norvegicus


Alignment Length:470 Identity:143/470 - (30%)
Similarity:217/470 - (46%) Gaps:61/470 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KGEFQQSLAITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTW 84
            :|.| .|..::.||...::.||....|...|..|.|...:.|.....:.:..|.|..||||.|||
  Rat    24 EGNF-YSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTW 87

  Fly    85 KDHRLRL--PENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMV 147
            .|.||:.  |..:.....|:    :..:|.||:||:|.|......||.||....|..:.||||.:
  Rat    88 TDERLKFKGPAEILSLNNLM----VSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMHNGTILYTM 148

  Fly   148 KLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPL----VVDENIELPQVALIR 208
            :||:...|.|....:|.|...|.|:..|.::...::|:.| ...||    |.:|:..|.|..||.
  Rat   149 RLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTW-KKGPLYSVEVPEESSSLLQYDLIG 212

  Fly   209 NETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGV 273
            ...:..|...:||.:..:.|.|.|:|::.|::...|.|..|.||:|.|||||..|:.|||...|:
  Rat   213 QTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGI 277

  Fly   274 TSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPK 338
            |::||::|....::.|||.|||..|:|.|::||..|||.||:|:..:|...:             
  Rat   278 TTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTN------------- 329

  Fly   339 PVAGDGPKKEGEGA--PPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVR 401
             :.....:::.:.|  ||...:.|....:|.::..:|.|..          ..:||.:.|.    
  Rat   330 -LQSQKAERQAQTAAKPPVAKSKTTESLEAEIVVHSDSKYH----------LKKRISSLTL---- 379

  Fly   402 PPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLF 466
                   |.:|..|:..:|:.|   |..|..|..|      |.|.||   :.....||:.||:||
  Rat   380 -------PIVPSSEASKVLSRT---PILPSTPVTP------PLLLPA---IGGTSKIDQYSRILF 425

  Fly   467 PALFASLNGIYWCVF 481
            |..||..|.:||.|:
  Rat   426 PVAFAGFNLVYWIVY 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 139/457 (30%)
Neur_chan_LBD 38..235 CDD:280998 62/202 (31%)
Neur_chan_memb 243..>334 CDD:280999 38/90 (42%)
Gabra6NP_068613.1 Neur_chan_LBD 33..240 CDD:280998 65/211 (31%)
LIC 34..440 CDD:273305 139/457 (30%)
Neur_chan_memb 247..437 CDD:280999 71/236 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.