DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabrd

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_058985.1 Gene:Gabrd / 29689 RGDID:61901 Length:449 Species:Rattus norvegicus


Alignment Length:528 Identity:143/528 - (27%)
Similarity:219/528 - (41%) Gaps:144/528 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ILVICTICMKHYAK------GEFQQSLAITDILPE-D--IKRYDKMRPPKKEGQPTIVYFHVTVM 62
            :|::||  ..|:..      |::..|......||. |  ::.|.:...|...|.|..|...:.|.
  Rat    11 LLLLCT--QPHHGARAMNDIGDYVGSNLEISWLPNLDGLMEGYARNFRPGIGGPPVNVALALEVA 73

  Fly    63 GLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQT 127
            .:|.|.|.:|.|...||..|:|:|.||..  |.|.|...|:..::..:|.||:|..||||..|..
  Rat    74 SIDHISEANMEYTMTVFLHQSWRDSRLSY--NHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHD 136

  Fly   128 MTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTP 192
            :|:.|..:.|..|..|||.:::|..::|.|:.|.||.|.|||.|.:||..::::|:::.|.....
  Rat   137 VTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSENQE 201

  Fly   193 LVVD-ENIELPQVALIRNE-TADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSW 255
            .:.. :.::|.|..:.... |.:.....|.|.|..|.:.|.|:|....|:..:|:|:.::|.|||
  Rat   202 QIHGLDRLQLAQFTITSYRFTTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSW 266

  Fly   256 VSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLI 320
            |||||...|.||||:||:|::||::|....::||||..|.:||:|.:..:|.||||.||:||...
  Rat   267 VSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFA 331

  Fly   321 N---------------------------IVL---------SDTPIPKPMAYPPKPVAGD------ 343
            :                           |||         .:..|.:.....|..:.|.      
  Rat   332 HFNADYRKKRKAKVKVTKPRAEMDVRNAIVLFSLSAAGVSQELAISRRQGRVPGNLMGSYRSVEV 396

  Fly   344 GPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDADG 408
            ..|||| |:.|||.....|:.:                                     |:||| 
  Rat   397 EAKKEG-GSRPGGPGGIRSRLK-------------------------------------PIDAD- 422

  Fly   409 PWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALFASL 473
                                                            .||..:|.:|||.||::
  Rat   423 ------------------------------------------------TIDIYARAVFPAAFAAV 439

  Fly   474 NGIYWCVF 481
            |.|||..:
  Rat   440 NIIYWAAY 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 137/496 (28%)
Neur_chan_LBD 38..235 CDD:280998 62/198 (31%)
Neur_chan_memb 243..>334 CDD:280999 43/126 (34%)
GabrdNP_058985.1 LGIC_ECD 63..246 CDD:355788 59/184 (32%)
LGIC_TM 249..>337 CDD:365787 40/87 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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