DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and GABRR2

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_002034.3 Gene:GABRR2 / 2570 HGNCID:4091 Length:465 Species:Homo sapiens


Alignment Length:527 Identity:154/527 - (29%)
Similarity:245/527 - (46%) Gaps:117/527 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QIIILVICTICMKHYAKGE----------------FQQSLAITDI---LPEDIKRYDK----MRP 45
            ::|:.:.|.:.:....|.:                ::::|.:|.|   .|:.:.|.|:    |||
Human     6 RLILFLFCLMVLVESRKPKRKRWTGQVEMPKPSHLYKKNLDVTKIRKGKPQQLLRVDEHDFSMRP 70

  Fly    46 PKKEGQPTI-VYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLP----ENMTQEYRLLEVD 105
              ..|.|.| |...|.|..||||.|..|.:...::....|||.||...    ::||.:.||    
Human    71 --AFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLAFSSASNKSMTFDGRL---- 129

  Fly   106 WLKNMWRPDSFFKNAK-SVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQEC 169
             :|.:|.||.||.::| |.|..| |..|..:.::.|..:||.:::|:...|.|:|:.:|.|:|.|
Human   130 -VKKIWVPDVFFVHSKRSFTHDT-TTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTC 192

  Fly   170 KLQMESLSHTTDDLIFQW-DPTTPLVVDENIELPQVALIRNETADCTQVY-STGNFTCLEVVFTL 232
            .|::||.::|.:||:..| :....|..||.|.|.|..:.:..|......| |||.:..|.:.|||
Human   193 SLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTL 257

  Fly   233 KRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLK 297
            :|.:.:::..||.|..::|::|||||||...|.||||:||:|::||::|......:|:|.|||:|
Human   258 RRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGVNASMPRVSYVK 322

  Fly   298 AVDAFMSVCTVFVFMALMEYCLINIVLS-----------DTPIPKPMAYPPKPVAGDGPKKEGEG 351
            |||.::.|..||||::::||..:|.:.:           ..|....|.: .|.:..||...|.| 
Human   323 AVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKFPCMCGMLH-SKTMMLDGSYSESE- 385

  Fly   352 APPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDADGPWIPRQES 416
                 :||.|...::.:| ..:|:.:||                   ||...|..:.        
Human   386 -----ANSLAGYPRSHIL-TEEERQDKI-------------------VVHLGLSGEA-------- 417

  Fly   417 RIILTPTIAPPPPPPQPAAPEPELPKPKL-------TPAQERLKRAIYIDRSSRVLFPALFASLN 474
                            .||.:..|.|.:.       |.|         ||:.||::|||.:...|
Human   418 ----------------NAARKKGLLKGQTGFRIFQNTHA---------IDKYSRLIFPASYIFFN 457

  Fly   475 GIYWCVF 481
            .|||.||
Human   458 LIYWSVF 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 147/482 (30%)
Neur_chan_LBD 38..235 CDD:280998 71/208 (34%)
Neur_chan_memb 243..>334 CDD:280999 40/101 (40%)
GABRR2NP_002034.3 Neur_chan_LBD 51..464 CDD:332142 146/480 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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