DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and GABRD

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_016856425.1 Gene:GABRD / 2563 HGNCID:4084 Length:687 Species:Homo sapiens


Alignment Length:460 Identity:134/460 - (29%)
Similarity:210/460 - (45%) Gaps:72/460 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRL 101
            |..|.:...|...|.|..|...:.|..:|.|.|.:|.|...||..|:|:|.||..  |.|.|...
Human   283 IAGYARNFRPGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSY--NHTNETLG 345

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
            |:..::..:|.||:|..||||..|..:|:.|..:.|..|..|||.:::|..::|.|:.|.||.|.
Human   346 LDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMDE 410

  Fly   167 QECKLQMESLSHTTDDLIFQWDPTTPLVVD-ENIELPQVALIRNE-TADCTQVYSTGNFTCLEVV 229
            |||.|.:||..::::|:::.|..:...:.. :.::|.|..:.... |.:.....|.|.|..|.:.
Human   411 QECMLDLESYGYSSEDIVYYWSESQEHIHGLDKLQLAQFTITSYRFTTELMNFKSAGQFPRLSLH 475

  Fly   230 FTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVS 294
            |.|:|....|:..:|:|:.::|.||||||||...|.||||:||:|::||::|....::||||..|
Human   476 FHLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPRAS 540

  Fly   295 YLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSNS 359
            .:||:|.:..:|.||||.||:||...:.                                   |:
Human   541 AIKALDVYFWICYVFVFAALVEYAFAHF-----------------------------------NA 570

  Fly   360 TASKQQATMLPLADEKIEKIEKIFDEMTKNRRIV-------------TTTRRVVRPPLDADGPWI 411
            ...|:|...:        |:.:...||.....||             ..:||..|.|.:..|.: 
Human   571 DYRKKQKAKV--------KVSRPRAEMDVRNAIVLFSLSAAGVTQELAISRRQRRVPGNLMGSY- 626

  Fly   412 PRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALFASLNGI 476
                 |.:...|..........:..:..: :.:|.|..     |..||..:|.:|||.||::|.|
Human   627 -----RSVGVETGETKKEGAARSGGQGGI-RARLRPID-----ADTIDIYARAVFPAAFAAVNVI 680

  Fly   477 YWCVF 481
            ||..:
Human   681 YWAAY 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 134/458 (29%)
Neur_chan_LBD 38..235 CDD:280998 62/198 (31%)
Neur_chan_memb 243..>334 CDD:280999 39/90 (43%)
GABRDXP_016856425.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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