DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and glra3

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_021333244.1 Gene:glra3 / 192124 ZFINID:ZDB-GENE-020402-1 Length:489 Species:Danio rerio


Alignment Length:472 Identity:160/472 - (33%)
Similarity:240/472 - (50%) Gaps:73/472 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL---RLPENMTQEYRL 101
            ||....|..:|.|..|..::.:....||.|.:|.|..::|..|.|.|.||   ..|::...    
Zfish    57 YDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLD---- 117

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
            |:...|.::|:||.||.|.|...|..:|..|..:.::|:..:||.::|||.|||.|:...:|.|.
Zfish   118 LDPSMLDSIWKPDLFFANEKGAHFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDV 182

  Fly   167 QECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALIRNETAD---CTQVYSTGNFTCLEV 228
            |.|.:|:||..:|.:||||:|....|:.|.:.:.|||  .|..:.:|   ||:.|:||.|||:||
Zfish   183 QTCIMQLESFGYTMNDLIFEWQEKGPVQVADGLTLPQ--FILKDESDLRYCTKHYNTGKFTCIEV 245

  Fly   229 VFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPV 293
            .|.|:|::.||:...|||:.:|||:|||||||..:||||||.||:|::||::||.:.|::|||.|
Zfish   246 RFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRTSLPKV 310

  Fly   294 SYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSN 358
            ||:||:|.:|:||.:|||.||:||..:|.|                                   
Zfish   311 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV----------------------------------- 340

  Fly   359 STASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRV-----VRPPLDADGPWIPR----- 413
               |:|...:|.....: :|..|.||: |.:..:..:.||:     ..|...:.|.....     
Zfish   341 ---SRQHKELLRFRRRR-KKSGKTFDQ-TFDEELAESLRRINGSRSAEPVYGSMGQLDQTNDMEE 400

  Fly   414 --QESRIILTPTIAPPPPPPQPAAPEPELP-KPKLTPAQERLK-RAIYIDRS------SRVLFPA 468
              :|||:..||........|:.|......| :|.:.|.:...: |.::|||:      ||..||.
Zfish   401 EVRESRLSFTPNAGKDGAVPKTANNAATTPSEPAVAPGKSHEEMRKLFIDRAKKIDTVSRAGFPL 465

  Fly   469 LFASLNGIYWCVFYEYL 485
            .|...|..|| |.|:.|
Zfish   466 AFLFFNIFYW-VLYKIL 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 157/466 (34%)
Neur_chan_LBD 38..235 CDD:280998 72/200 (36%)
Neur_chan_memb 243..>334 CDD:280999 48/90 (53%)
glra3XP_021333244.1 LIC 13..478 CDD:273305 158/467 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.930

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