DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and glra3

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_021333244.1 Gene:glra3 / 192124 ZFINID:ZDB-GENE-020402-1 Length:489 Species:Danio rerio


Alignment Length:472 Identity:160/472 - (33%)
Similarity:240/472 - (50%) Gaps:73/472 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL---RLPENMTQEYRL 101
            ||....|..:|.|..|..::.:....||.|.:|.|..::|..|.|.|.||   ..|::...    
Zfish    57 YDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLD---- 117

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
            |:...|.::|:||.||.|.|...|..:|..|..:.::|:..:||.::|||.|||.|:...:|.|.
Zfish   118 LDPSMLDSIWKPDLFFANEKGAHFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDV 182

  Fly   167 QECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALIRNETAD---CTQVYSTGNFTCLEV 228
            |.|.:|:||..:|.:||||:|....|:.|.:.:.|||  .|..:.:|   ||:.|:||.|||:||
Zfish   183 QTCIMQLESFGYTMNDLIFEWQEKGPVQVADGLTLPQ--FILKDESDLRYCTKHYNTGKFTCIEV 245

  Fly   229 VFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPV 293
            .|.|:|::.||:...|||:.:|||:|||||||..:||||||.||:|::||::||.:.|::|||.|
Zfish   246 RFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRTSLPKV 310

  Fly   294 SYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSN 358
            ||:||:|.:|:||.:|||.||:||..:|.|                                   
Zfish   311 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV----------------------------------- 340

  Fly   359 STASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRV-----VRPPLDADGPWIPR----- 413
               |:|...:|.....: :|..|.||: |.:..:..:.||:     ..|...:.|.....     
Zfish   341 ---SRQHKELLRFRRRR-KKSGKTFDQ-TFDEELAESLRRINGSRSAEPVYGSMGQLDQTNDMEE 400

  Fly   414 --QESRIILTPTIAPPPPPPQPAAPEPELP-KPKLTPAQERLK-RAIYIDRS------SRVLFPA 468
              :|||:..||........|:.|......| :|.:.|.:...: |.::|||:      ||..||.
Zfish   401 EVRESRLSFTPNAGKDGAVPKTANNAATTPSEPAVAPGKSHEEMRKLFIDRAKKIDTVSRAGFPL 465

  Fly   469 LFASLNGIYWCVFYEYL 485
            .|...|..|| |.|:.|
Zfish   466 AFLFFNIFYW-VLYKIL 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 157/466 (34%)
LGIC_ECD_HisCl 51..235 CDD:349793 68/189 (36%)
Cys-loop 155..169 CDD:349793 5/13 (38%)
glra3XP_021333244.1 LIC 13..478 CDD:273305 158/467 (34%)

Return to query results.
Submit another query.