DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and lgc-58

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001368738.1 Gene:lgc-58 / 191637 WormBaseID:WBGene00001587 Length:553 Species:Caenorhabditis elegans


Alignment Length:562 Identity:153/562 - (27%)
Similarity:263/562 - (46%) Gaps:95/562 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IIILVICTICMKHYAKGEFQQS----LAITDILPEDIKRYDKMRPP---KKEGQPTIVYFHVTVM 62
            :::..|..:..::..|.|..:|    :.:.::|....:.||...||   .|| :.|:|...:.:.
 Worm     2 LLVSSIFLLLYRNSPKVEASRSEPVPIYLDNLLNAGRQVYDNQSPPVQHDKE-EVTVVELAMYIE 65

  Fly    63 GLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQT 127
            |:.|....:|.:..||:|.|.|:|.  ||..|.|:...:.:...|..||:||.:|.||:...|..
 Worm    66 GMSSFRTQTMDFQLDVYFQQFWRDP--RLAHNETRRVLVKDKAVLHKMWKPDVYFANARIAEFHE 128

  Fly   128 MTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTP 192
            :|.||..:|:..|.:|||..::::.:.|.:|...:|.|:|.|.|::.|.::||:.|:.:|....|
 Worm   129 VTQPNFLVWIQPDGSILYDTRISMVVVCTLNLEKWPLDSQRCHLRILSYAYTTEQLVIKWKEDEP 193

  Fly   193 LVVDENIELPQVALIRNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVS 257
            :..:.||.:..:.::......|...||||.::|:...|.:||.:.::|..:|:||.:||::||.|
 Worm   194 ITRNPNIAMSDMHIVDLYPGLCDGNYSTGTWSCVTAEFFVKREITHHVMQSYVPTTLIVVISWFS 258

  Fly   258 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINI 322
            ||:..||.||||:|.:|:|||||||...::.:||.|||:||:|.:|..|.:|||..::|:.::|.
 Worm   259 FWLDVEAVPARVSLAITTLLTLSTQANAARMALPEVSYMKAIDVWMGACMMFVFGVMIEFTIVNY 323

  Fly   323 V--------LSDTPIPKPMAYPPKPV-AGDGPKKEGEGAPPGGSNS--------TASKQQATMLP 370
            .        .:|..|  .||...:.| :|:..||...|  ..|:::        |..:|.....|
 Worm   324 AQRQGRKWHRTDAEI--VMASSLESVKSGNAEKKPSRG--DLGAHARHLFLRLRTNERQHLVEDP 384

  Fly   371 LADEKIEKIEKIFDEMTK---NRRIVTTTRRVVRPPLDADGP-----WIPRQESRIILTPTIAPP 427
              .|:|...:..:|.:::   |.........||:||.:.|..     |..::|:.:   ..:...
 Worm   385 --PEQIAMNDTAYDTVSQAYSNSFSDEEAAPVVQPPQNEDAEAQEEVWAEQKETNL---SEVWKE 444

  Fly   428 PPPPQPAAPEPELPKPKLTP------------AQERLK--------------------------- 453
            ..|.:..|...|......:|            |.|::|                           
 Worm   445 SDPAERLAHWNEKENDASSPLMGNGRAHVRYGAAEKMKNRKCNDSSRKKEKWSSAIKQIQKHKRN 509

  Fly   454 -----------RAIYIDRSSRVLFPALFASLNGIYWCVFYEY 484
                       ||..||::||.:||..|...|..|| ::|.|
 Worm   510 GSVFGKIAGRNRAKKIDQTSRWIFPLTFIIFNLTYW-IYYLY 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 147/527 (28%)
Neur_chan_LBD 38..235 CDD:280998 61/199 (31%)
Neur_chan_memb 243..>334 CDD:280999 42/98 (43%)
lgc-58NP_001368738.1 LIC 30..548 CDD:273305 147/530 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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