DRSC/TRiP Functional Genomics Resources

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Protein Alignment ort and lgc-47

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_741878.1 Gene:lgc-47 / 181193 WormBaseID:WBGene00009799 Length:428 Species:Caenorhabditis elegans


Alignment Length:15 Identity:7/15 - (46%)
Similarity:9/15 - (60%) Gaps:0/15 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ISFGIILVSIVLCIL 27
            |:|..:|....||||
 Worm   517 ITFSFLLYLNALCIL 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710
LGIC_ECD_HisCl 51..235 CDD:349793
Cys-loop 155..169 CDD:349793
lgc-47NP_741878.1 LGIC_ECD_GABAAR 82..264 CDD:349791
Cys-loop 185..199 CDD:349791
LGIC_TM_anion 267..416 CDD:349851
TM1 helix 267..290 CDD:349851
TM2 helix 294..318 CDD:349851
TM3 helix 326..391 CDD:349851
TM4 helix 392..416 CDD:349851
Blue background indicates that the domain is not in the aligned region.

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