DRSC/TRiP Functional Genomics Resources

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Protein Alignment ort and lgc-44

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_505954.2 Gene:lgc-44 / 179600 WormBaseID:WBGene00009790 Length:618 Species:Caenorhabditis elegans


Alignment Length:304 Identity:89/304 - (29%)
Similarity:166/304 - (54%) Gaps:7/304 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 EFQQSLAITDILPEDIK-RYDKMRPPKKEGQPTI-VYFHVTVMGLDSIDENSMTYVADVFFAQTW 84
            ::|:.|..:.|||...| .||..:||......|: |...:.|..:.:.:.::|.|..|.:...:|
 Worm   240 DYQRPLPSSTILPFLRKMEYDARQPPSLHVDDTVTVKVGIAVQSMSNFELSTMDYDLDAWVRMSW 304

  Fly    85 KDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKL 149
            .|.|||  .::::...:.:..:||.:||||..|.|:|..||..:|..|.|::::.|..|...:::
 Worm   305 IDPRLR--HDLSRPILVNDYTFLKMIWRPDPIFTNSKYSTFHKVTYLNFYLFIFPDGKIFMDMRV 367

  Fly   150 TLK-LSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQW--DPTTPLVVDENIELPQVALIRNET 211
            .|| .:..:....||||.....|::.|:..|.|.:..:|  |....:.:::|:::|::::.....
 Worm   368 YLKPTAAQIVLCKYPHDNPAVSLKISSMGFTQDVVKLEWFSDTNDAIWIEKNVKIPELSIRHLHP 432

  Fly   212 ADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSL 276
            ..|..|..:|.::|||..|.:.|.:.|::.||||||.:.|:.||:|.|:..|....|:.:.:|..
 Worm   433 DTCNGVRKSGVYSCLEAKFYMHREVGYHIANTYIPTAICVVFSWISVWLPEEFVEGRIFVSLTVF 497

  Fly   277 LTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLI 320
            ||||.::..::..||.|||:||:|.:....:.|||:.:::..::
 Worm   498 LTLSAENNSAKEELPKVSYVKAIDIWFGFTSTFVFLTMLQALVV 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 87/295 (29%)
LGIC_ECD_HisCl 51..235 CDD:349793 48/187 (26%)
Cys-loop 155..169 CDD:349793 4/13 (31%)
lgc-44NP_505954.2 LGIC_ECD_anion 273..456 CDD:349788 47/184 (26%)
Cys-loop 374..388 CDD:349788 4/13 (31%)
LGIC_TM_anion 459..603 CDD:349851 30/83 (36%)
TM1 helix 459..482 CDD:349851 12/22 (55%)
TM2 helix 486..510 CDD:349851 6/23 (26%)
TM3 helix 518..579 CDD:349851 6/24 (25%)
TM4 helix 580..603 CDD:349851
Blue background indicates that the domain is not in the aligned region.

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