DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and lgc-49

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_505841.2 Gene:lgc-49 / 179547 WormBaseID:WBGene00010741 Length:457 Species:Caenorhabditis elegans


Alignment Length:468 Identity:113/468 - (24%)
Similarity:190/468 - (40%) Gaps:119/468 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRL------PENMTQE 98
            |:|.|.|.:.|.|..|.|  .|..:.||:|.:..:..|::..:.|.|..|:.      .:|::..
 Worm    67 YNKFRIPNENGVPVQVEF--WVQAITSINEITNDFEMDIYINEMWLDPALKFDHLNPCKQNLSVS 129

  Fly    99 YRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYP 163
            :::||     .:|.|:|.|.|:|..........|.::.:|.:.|:....::.:|..|.::..::|
 Worm   130 HQVLE-----QLWTPNSCFVNSKFAEIHDSPFKNVFLMIYPNGTVWVNYRVNVKGPCDLSLELFP 189

  Fly   164 HDTQECKLQMESLSHTTDDLIFQWDPTT--PLVVDENIELPQVALIRNETADCTQVYSTGNFTCL 226
            .|.|||.|..||.::...::..:|:..:  |:.|...|.||...||:.|:...:..|..|.:..|
 Worm   190 LDIQECHLIYESFNYNNQEVRMRWNEKSAEPVSVTNKIRLPDFELIKIESTRISAPYPAGMWDEL 254

  Fly   227 EVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLP 291
            .|....:||.::|....|:||.:.:.:||:||.:..:|.|||..|||.:||.:..|......:||
 Worm   255 HVKLVFERRYIWYFMQAYLPTYLTIFISWISFSLGTKAMPARTMLGVNALLAMIFQFGNIMRNLP 319

  Fly   292 PVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGG 356
            .|||:||:|.:|.|...|:|::|:|..::             .|..|                  
 Worm   320 RVSYVKAIDVWMLVSMTFIFLSLLELAIV-------------GYKTK------------------ 353

  Fly   357 SNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDADGPWIPRQESRIILT 421
             |...||::.....|.|.                             .:|....:.|.|.|.:| 
 Worm   354 -NEEGSKKKCPHKKLLDN-----------------------------FEASPAGLCRYEKRFML- 387

  Fly   422 PTIAPPPPPPQPAAPEPELPKPKLTPAQERLKR-------AIY----------IDRSSRVLFPAL 469
                                     |.:.|..|       .::          |||.|.::|||.
 Worm   388 -------------------------PVERRSARWGGIIRFQVFQDFWNWSPEKIDRVSAIMFPAC 427

  Fly   470 FASLNGIYWCVFY 482
            ||..|.:||..:|
 Worm   428 FAIFNIVYWSYYY 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 112/465 (24%)
Neur_chan_LBD 38..235 CDD:280998 51/202 (25%)
Neur_chan_memb 243..>334 CDD:280999 31/90 (34%)
lgc-49NP_505841.2 LIC 53..439 CDD:273305 112/465 (24%)
Neur_chan_LBD 57..264 CDD:280998 52/203 (26%)
Neur_chan_memb 272..436 CDD:280999 56/250 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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