DRSC/TRiP Functional Genomics Resources

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Protein Alignment ort and acc-4

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001407497.1 Gene:acc-4 / 176778 WormBaseID:WBGene00012099 Length:409 Species:Caenorhabditis elegans


Alignment Length:356 Identity:92/356 - (25%)
Similarity:158/356 - (44%) Gaps:39/356 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QIIILVICTI-----------------CMKHYAKGEFQQSLAITD--------ILPEDIKRYDKM 43
            ::|||||..:                 ||.:..|.....|:..|:        |:.:.:..|:|:
 Worm     2 RLIILVISILISNAGSLLRSLEDDSNECMFNCPKRARNVSVPHTEKTCMGDDAIIAQILDGYNKL 66

  Fly    44 RPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKD------HRLRLPENMTQEYRLL 102
            ..|  .|...:|...:.|..:..|.|.:..:..|::..:.|.|      |......||:.:...:
 Worm    67 DLP--GGGHVVVSIEIWVQEVSKIIEITSEFELDIYVTERWTDPSLAYSHLNPCKSNMSVDGATI 129

  Fly   103 EVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQ 167
                |..:|.|.:.|.|:|..........|.::.:|.:.:|.:..::.|...|......:|.|.|
 Worm   130 ----LNKIWNPHACFVNSKLANIHESPFKNIFLQIYSNGSIWHNYRIKLTGPCSSTLRTFPIDQQ 190

  Fly   168 ECKLQMESLSHTTDDLIFQWDPTTP--LVVDENIELPQVALIRNETADCTQVYSTGNFTCLEVVF 230
            .|.|..||.:|.||.:..:|..|.|  .::..||.||...|:...::...::|..|.|..|...|
 Worm   191 RCMLFYESFTHNTDQVKMEWITTVPPITILKGNITLPDYVLVDFSSSSELRLYPPGIFNELIATF 255

  Fly   231 TLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSY 295
            |.:|...:|:...|:|..:.|.:|||||.:..|..|:|.|:||.|||.|:.|.....::||..|.
 Worm   256 TFQRLYGFYILQVYVPAYISVFISWVSFTLGAEQIPSRTTVGVNSLLALTFQFGAVVNNLPKTSD 320

  Fly   296 LKAVDAFMSVCTVFVFMALMEYCLINIVLSD 326
            :||:|.::.....|:|.:|:|..::..:..|
 Worm   321 VKAIDVWILSSMAFIFASLIELAVVGYLSRD 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 82/312 (26%)
LGIC_ECD_HisCl 51..235 CDD:349793 45/191 (24%)
Cys-loop 155..169 CDD:349793 4/13 (31%)
acc-4NP_001407497.1 LGIC_ECD_GABAAR 74..259 CDD:349791 45/188 (24%)
Cys-loop 178..192 CDD:349791 4/13 (31%)
LGIC_TM_anion 263..396 CDD:349851 31/89 (35%)
TM1 helix 263..286 CDD:349851 9/22 (41%)
TM2 helix 290..314 CDD:349851 10/23 (43%)
TM3 helix 322..348 CDD:349851 7/25 (28%)
TM4 helix 349..396 CDD:349851 1/3 (33%)

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