DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gab-1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_499661.2 Gene:gab-1 / 176691 WormBaseID:WBGene00001512 Length:550 Species:Caenorhabditis elegans


Alignment Length:518 Identity:145/518 - (27%)
Similarity:235/518 - (45%) Gaps:89/518 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SLAITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLR 90
            |..::|:|.:    ||....|...|...::...:.:...|||.|..|.|...::..|.|.|.|||
 Worm    55 SSLLSDLLLD----YDIRLRPGFGGDALLLTMDIIIASFDSISEVDMDYTLTMYLHQYWTDERLR 115

  Fly    91 LPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSC 155
            ....:..:...|..::.:|:|.||:|..|.|......:|..|..:.:..|..:.|.::||..|||
 Worm   116 WSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSC 180

  Fly   156 IMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVD--ENIELPQVALIRNETADCTQVY 218
            .||...:|.|:|.|.:::||..:||.:::.:|:  .||.|.  |..::||..:....|.|.....
 Worm   181 SMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWN--YPLAVHGVEQADVPQFTITGFHTEDSIVST 243

  Fly   219 STGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 283
            :||::..|.:||.|:|.:.|::|.||:|..:||::|||||||..||..|||.||:|::||::|..
 Worm   244 ATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIVMLSWVSFWINHEATSARVALGITTVLTMTTIS 308

  Fly   284 AKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKE 348
            ...:.|||.:||:|::|.::.:|.||||.||:||..:|.........|.......||.| ..|::
 Worm   309 TGVRQSLPRISYVKSIDIYLVMCFVFVFAALLEYAAVNYSYWGRERGKGGGGNEWPVNG-ANKED 372

  Fly   349 GEGA-------PPGGSNSTASKQQATMLPLADEKIEKIEKIF---DEMTKNRRIVTTTRRVVR-- 401
            .|.|       |.|..:.....|        |.::|.:|:..   :...:|....:|::...|  
 Worm   373 RESAVNVQKWVPSGLMDGVPQPQ--------DRRVEALEEAMSTSNTAAQNNNFESTSKPKKRSS 429

  Fly   402 ---PPL---------DADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPEL-------------- 440
               |||         :::.|..||..:..:            :.|.|...|              
 Worm   430 SPIPPLCRAGNTISEESESPDYPRYSTTSL------------KGARPHASLNHKTHHLKGRSSAR 482

  Fly   441 PKPKLTPAQ-------------ERLKRAI---------YIDRSSRVLFPALFASLNGIYWCVF 481
            .|.::|.|:             .|.::.|         .||:.|||:||..|...|..||..:
 Worm   483 AKRRMTLARMNVSMKQSISGIGRRARKVIPTIRVRDVNLIDKYSRVVFPVCFIVFNLFYWSYY 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 144/511 (28%)
Neur_chan_LBD 38..235 CDD:280998 58/198 (29%)
Neur_chan_memb 243..>334 CDD:280999 41/90 (46%)
gab-1NP_499661.2 LIC 67..545 CDD:273305 140/500 (28%)
Neur_chan_LBD 68..259 CDD:280998 56/192 (29%)
Neur_chan_memb 268..542 CDD:280999 79/294 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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