DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Glra1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001277750.1 Gene:Glra1 / 14654 MGIID:95747 Length:457 Species:Mus musculus


Alignment Length:474 Identity:149/474 - (31%)
Similarity:227/474 - (47%) Gaps:111/474 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 YDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL---RLPENMTQEYRL 101
            ||....|..:|.|..|..::.:....||.|.:|.|..::|..|.|.|.||   ..|::...    
Mouse    52 YDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLD---- 112

  Fly   102 LEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDT 166
            |:...|.::|:||.||.|.|...|..:|..|..:.:.::..:||.:::||.|:|.|:...:|.|.
Mouse   113 LDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDV 177

  Fly   167 QECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALIRNETAD---CTQVYSTGNFTCLEV 228
            |.|.:|:||..:|.:||||:|.....:.|.:.:.|||  .|..|..|   ||:.|:||.|||:|.
Mouse   178 QTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQ--FILKEEKDLRYCTKHYNTGKFTCIEA 240

  Fly   229 VFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPV 293
            .|.|:|::.||:...|||:.:|||:||:||||..:||||||.||:|::||::||.:.|::|||.|
Mouse   241 RFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKV 305

  Fly   294 SYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSN 358
            ||:||:|.:|:||.:|||.||:||..:|.|                                   
Mouse   306 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV----------------------------------- 335

  Fly   359 STASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPL-----DAD----------- 407
               |:|.                  .|:.:.||    .||..:.|:     |.:           
Mouse   336 ---SRQH------------------KELLRFRR----KRRHHKSPMLNLFQDDEGGEGRFNFSAY 375

  Fly   408 --GPWIPRQESRIIL-----TPTIAPPPPPPQPAAPEPELPKPKLTPAQER---LKRAIYIDRSS 462
              ||...:.:..|.:     ..|..|||.|.:             :|.:.|   ::||..||:.|
Mouse   376 GMGPACLQAKDGISVKGANNNNTTNPPPAPSK-------------SPEEMRKLFIQRAKKIDKIS 427

  Fly   463 RVLFPALFASLNGIYWCVF 481
            |:.||..|...|..||.::
Mouse   428 RIGFPMAFLIFNMFYWIIY 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 149/472 (32%)
Neur_chan_LBD 38..235 CDD:280998 68/200 (34%)
Neur_chan_memb 243..>334 CDD:280999 47/90 (52%)
Glra1NP_001277750.1 LIC 7..446 CDD:273305 149/472 (32%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 230..235 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..410 5/31 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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