DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabrr1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_032101.3 Gene:Gabrr1 / 14408 MGIID:95625 Length:480 Species:Mus musculus


Alignment Length:482 Identity:145/482 - (30%)
Similarity:214/482 - (44%) Gaps:114/482 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EDIKRYD----KMRPPKKEGQPTI-VYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPE- 93
            |.:.|.|    .|||  ..|.|.| |...|.|..||||.|..|.:...::....|||.||..|. 
Mouse    77 EQLLRIDDHDFSMRP--GFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSS 139

  Fly    94 ---NMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSC 155
               :||.:.||     :|.:|.||.||.::|.......|..|..:.:..|..:||.:::|:...|
Mouse   140 NNLSMTFDGRL-----VKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMC 199

  Fly   156 IMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDP-TTPLVVDENIELPQVALIRNETADCTQVY- 218
            .|:|:.:|.|||.|.|::||.::|.|||:..|.. ...|..||.|.|.|..:....|......| 
Mouse   200 NMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYS 264

  Fly   219 STGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 283
            |||.:..|.:.|||:|.:.:::..||.|..::|::|||||||...|.||||.||:|::||:||..
Mouse   265 STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTII 329

  Fly   284 AKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIV--------------LSDT-PIPKPM 333
            ....:|:|.|||:||||.::.|..||||::::||..:|.:              :|.| .:|:  
Mouse   330 TGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISCTCGLPQ-- 392

  Fly   334 AYPPKPVAGDGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRR 398
               |:.|..|....:||....||           .:|...||                       
Mouse   393 ---PRGVMLDSSYSDGEVNDLGG-----------YMPENGEK----------------------- 420

  Fly   399 VVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIY------ 457
                            ..|:::..|:|.....|                 |.:.:|..|      
Mouse   421 ----------------PDRMMVQLTLASERGSP-----------------QRKGQRGSYVSMRIN 452

  Fly   458 ---IDRSSRVLFPALFASLNGIYWCVF 481
               ||:.||::|||.:...|.|||.:|
Mouse   453 THAIDKYSRIIFPAAYILFNLIYWSIF 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 144/480 (30%)
Neur_chan_LBD 38..235 CDD:280998 71/207 (34%)
Neur_chan_memb 243..>334 CDD:280999 43/105 (41%)
Gabrr1NP_032101.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..67
LIC 76..479 CDD:273305 144/480 (30%)
Neur_chan_LBD 77..282 CDD:280998 73/211 (35%)
Neur_chan_memb 289..476 CDD:280999 69/258 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.