DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabrg1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_034382.2 Gene:Gabrg1 / 14405 MGIID:103156 Length:465 Species:Mus musculus


Alignment Length:470 Identity:136/470 - (28%)
Similarity:214/470 - (45%) Gaps:81/470 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPE 93
            ||.||...::.||....|....:||::...|.|..:..:|..:|.|..|:.|||||.|.||:.  
Mouse    64 ITQILNSLLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKF-- 126

  Fly    94 NMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMN 158
            |.|.:..:|..:.:..:|.||:||:|::......:|.||..:.::.|..:||.::||:...|.:.
Mouse   127 NSTMKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQ 191

  Fly   159 FAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENI-ELPQVALI--RNETADCTQVYST 220
            ...:|.|...|.|:..|..:..:::.::|...:..|.|... .|.|.|.:  ||.|.....:  :
Mouse   192 LHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLRNSTEISHTI--S 254

  Fly   221 GNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAK 285
            |::..:.:.|.|.||:.|:...||||..:.|::|||||||..:|.|||.:||:|::||::|....
Mouse   255 GDYIIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTI 319

  Fly   286 SQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGE 350
            ::.|||.|||:.|:|.|:|||.:|||.|||||..::...|:.        ..|...|...|.:..
Mouse   320 ARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSNN--------KGKTTRGRKLKNKTS 376

  Fly   351 GAPPGGSNSTASKQQATMLPLADEK--IEKIEK--------IFDEMTKNRRIVTTTRRVVRPPLD 405
            .:|...:.||.....:..||..::.  .:.:|.        .||:.                   
Mouse   377 ASPGLHAGSTLIPMNSISLPQGEDDYGYQCLEGKDCTSFFCCFDDC------------------- 422

  Fly   406 ADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALF 470
            ..|.|   :|.||.:                                 |...||..||:.||..|
Mouse   423 RTGSW---REGRIHI---------------------------------RIAKIDSYSRIFFPTAF 451

  Fly   471 ASLNGIYWCVFYEYL 485
            |..|.:|| |.|.||
Mouse   452 ALFNLVYW-VGYLYL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 130/462 (28%)
Neur_chan_LBD 38..235 CDD:280998 54/199 (27%)
Neur_chan_memb 243..>334 CDD:280999 43/90 (48%)
Gabrg1NP_034382.2 Neur_chan_LBD 65..270 CDD:280998 58/208 (28%)
LIC 66..462 CDD:273305 131/463 (28%)
Neur_chan_memb 277..459 CDD:280999 69/244 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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