DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabre

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_059065.2 Gene:Gabre / 14404 MGIID:1330235 Length:916 Species:Mus musculus


Alignment Length:511 Identity:138/511 - (27%)
Similarity:224/511 - (43%) Gaps:112/511 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CMKHYAKGEFQQSLAITDILPEDIKRYD-KMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVAD 77
            ||.....|:..::..|.:.:   :..|| |:||...| :||:|...|.|..|..|....|.|..|
Mouse   470 CMTERPGGKLTRASRILNTI---LSNYDHKLRPGIGE-KPTVVTVEVIVNSLGPISTPDMEYSID 530

  Fly    78 VFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKT 142
            :.|.|||.|.|||.  |.|.|..:|..:.:..:|.||:||:|:|......:||||....::||..
Mouse   531 IIFHQTWYDERLRY--NDTFETLILHGNVVSQLWIPDTFFRNSKRTQEYDITIPNQMALIHKDGK 593

  Fly   143 ILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVAL- 206
            :||.|::|:...|.::...:|.|:..|.|...|.|:...::|::|         ||.:|...|. 
Mouse   594 VLYSVRMTIDARCSLHMLNFPMDSHSCPLSFSSFSYDDSEMIYKW---------ENFKLEINAKN 649

  Fly   207 -----------IRNETADCTQVYST--GNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSF 258
                       :.|:    |::.||  |:|..:...|.:.||..:.||..|:|:.:..::|||||
Mouse   650 TWKLLEFDFTGVNNK----TEIISTPFGDFMVMTFFFNVSRRFGFIVFQNYVPSSVTTMLSWVSF 710

  Fly   259 WIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIV 323
            |||.|||.||.::||:|:||::|....|..:.|.||||.|:|.::::|.|..|..|:|:.::|.:
Mouse   711 WIKIEAAAARASVGVSSVLTMATLGTLSCKNFPRVSYLTALDFYIAICFVLCFCTLLEFAVLNFL 775

  Fly   324 LSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTK 388
            ..:.                                  .|:||::            |:: ::..
Mouse   776 TYNN----------------------------------IKRQASL------------KVY-QLPT 793

  Fly   389 NRRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQ-----PAAPEPELPKPK---- 444
            |.|....||...|....|...  .||:..:.:...:.......:     |.:..|:.|..:    
Mouse   794 NSRANARTRARARTRARARAR--ARQQQEVFVCEIVTYEENAEEGYQWSPRSRRPQCPWRRCGRS 856

  Fly   445 ------------LTPAQE-------RLKRAIY-IDRSSRVLFPALFASLNGIYWCV 480
                        :.|..|       |:...:| :|..||||||..|...|.:||.:
Mouse   857 YVCFRVLRKYFCMAPGCEGGSWQRGRICIHVYRLDNYSRVLFPITFFFFNVLYWLI 912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 134/494 (27%)
Neur_chan_LBD 38..235 CDD:280998 65/211 (31%)
Neur_chan_memb 243..>334 CDD:280999 35/90 (39%)
GabreNP_059065.2 Neur_chan_LBD 482..687 CDD:280998 66/223 (30%)
LIC 484..912 CDD:273305 135/495 (27%)
Neur_chan_memb 696..910 CDD:280999 63/262 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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