DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabrb2

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001334243.1 Gene:Gabrb2 / 14401 MGIID:95620 Length:512 Species:Mus musculus


Alignment Length:542 Identity:147/542 - (27%)
Similarity:245/542 - (45%) Gaps:109/542 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FQIIILVICTICMKHYAKGEFQQSL-------AITDILPEDIKRYDKMRPPKKEGQPTIVYFHVT 60
            |.:||..:|.            ||:       .:.:.:...:|.||....|...|.|..|..::.
Mouse    15 FPLIIAAVCA------------QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNID 67

  Fly    61 VMGLDSIDENSMTYVADVFFAQTWKDHRLR---LPENMTQEYRLLEVDWLKNMWRPDSFFKNAKS 122
            :..:|.:.|.:|.|...::|.|.|:|.||.   :|.|:|.:.|:.:     .:|.||::|.|.|.
Mouse    68 IASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVAD-----QLWVPDTYFLNDKK 127

  Fly   123 VTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQW 187
            .....:|:.|..:.|:.|.|:||.:::|...:|:|:...||.|.|.|.|::||..:||||:.|.|
Mouse   128 SFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYW 192

  Fly   188 DPTTPLVVDEN-------IELPQVALIRNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYI 245
            ..      |:|       |||||.:::..:......|:|||::..|.:.|.|||.:.|::..||:
Mouse   193 RG------DDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYM 251

  Fly   246 PTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFV 310
            |:.:|.|:|||||||..:|:.|||.||:|::||::|.:...:.:||.:.|:||:|.::..|.|||
Mouse   252 PSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316

  Fly   311 FMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSNSTAS------------- 362
            ||||:||.|:|.:.                .|.||:::.:.|....:.:...             
Mouse   317 FMALLEYALVNYIF----------------FGRGPQRQKKAAEKAANANNEKMRLDVNKMFYKDI 365

  Fly   363 KQQATML-----PLADEKIEKIEKIFD----EMTKNRRIVTTTRRVVRPPLDADG---------- 408
            ||..|..     |..|....:....:|    .|..:..|:.:|..:......::.          
Mouse   366 KQNGTQYRSLWDPTGDLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEAVMGLGDPRST 430

  Fly   409 -------------PWIPRQE-SRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYID 459
                         ..:||.. .|..|...:|......:..|.:.::..|.||....       ||
Mouse   431 MLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNA-------ID 488

  Fly   460 RSSRVLFPALFASLNGIYWCVF 481
            |.||:.||.:|:..|.:||..:
Mouse   489 RWSRIFFPVVFSFFNIVYWLYY 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 141/505 (28%)
Neur_chan_LBD 38..235 CDD:280998 66/206 (32%)
Neur_chan_memb 243..>334 CDD:280999 40/90 (44%)
Gabrb2NP_001334243.1 LIC 9..510 CDD:273305 147/540 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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