DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabra4

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001345970.1 Gene:Gabra4 / 14397 MGIID:95616 Length:578 Species:Mus musculus


Alignment Length:494 Identity:137/494 - (27%)
Similarity:215/494 - (43%) Gaps:85/494 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRL--PENMTQEYRLLEVDWLKNM-- 110
            |..|.|...:.|.....:.:..|.|..||||.|||.|.||:.  |         :|:..|.||  
Mouse    95 GPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGP---------IEILRLNNMMV 150

  Fly   111 ---WRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQ 172
               |.||:||:|.|......||.||....:.::.||||.::||:...|.|....:|.|...|.|:
Mouse   151 TKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLK 215

  Fly   173 MESLSHTTDDLIFQWDPTTPLVVD---ENIELPQVALIRNETADCTQVYSTGNFTCLEVVFTLKR 234
            ..|.::...::|:.|.......|:   |:..|.|..||....:..|....||.:..:.|.|.|:|
Mouse   216 FGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRR 280

  Fly   235 RLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAV 299
            ::.|::..||||..|.||:|.|||||..|:.|||...|:|::||::|....::.|||.|||..|:
Mouse   281 KMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAM 345

  Fly   300 DAFMSVCTVFVFMALMEYCLIN------IVLSDTPIPKPMAYPPK-PVAGDGPKKEGEGAPPGGS 357
            |.|::||..|||.||:|:..:|      :..:...|.||   ||: |.|....:|..|.:.....
Mouse   346 DWFIAVCFAFVFSALIEFAAVNYFTNIQMQKAKKKISKP---PPEVPAAPVLKEKHTETSLQNTH 407

  Fly   358 NSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDADGPWIPRQESRIILTP 422
            .:...:::...|..::..::...::.:..:|...:..::....:..|.:.    |...||.....
Mouse   408 ANLNMRKRTNALVHSESDVKSRTEVGNHSSKTSAVQESSEATPKAHLASS----PNPFSRANAAE 468

  Fly   423 TI----------APPPP------------PPQP-----------------------AAPEPELPK 442
            |:          |.|.|            ..:|                       |.|.|..|.
Mouse   469 TMSAAARGLSSAASPSPHGTLRPASLGSASTRPAFGSRLGRIKTTVNTTGAAGNVSATPPPPAPP 533

  Fly   443 PKLTPAQERLKRAIYIDRSSRVLFPALFASLNGIYWCVF 481
            |..:...:       ||:.:|:|||..|.:.|.:||.|:
Mouse   534 PSGSGTSK-------IDKYARILFPVTFGAFNMVYWVVY 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 136/492 (28%)
Neur_chan_LBD 38..235 CDD:280998 59/194 (30%)
Neur_chan_memb 243..>334 CDD:280999 43/96 (45%)
Gabra4NP_001345970.1 Neur_chan_LBD 13..565 CDD:332142 136/492 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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