DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabra3

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001344745.1 Gene:Gabra3 / 14396 MGIID:95615 Length:523 Species:Mus musculus


Alignment Length:471 Identity:134/471 - (28%)
Similarity:213/471 - (45%) Gaps:79/471 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPEN 94
            |.||...:..||....|......|.|...:.|.....:.:..|.|..||||.|||.|.||:....
Mouse    99 TRILDRLLDGYDNRLRPGLGDAVTEVKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGP 163

  Fly    95 MTQEYRLLEVDWL--KNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIM 157
            |    ::|.::.|  ..:|.||:||.|.|......||.||..:.|..:.|:||.::||:...|.|
Mouse   164 M----KILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPM 224

  Fly   158 NFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQ----------------VAL 206
            :...:|.|...|.|:..|.::|..::|:.|    .|..::::|:.|                ..:
Mouse   225 HLEDFPMDVHACPLKFGSYAYTKAEVIYSW----TLGKNKSVEVAQDGSRLNQYDLLGHVVGTEI 285

  Fly   207 IRNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTL 271
            ||:         |||.:..:...|.|||::.|:|..||:|..|.||:|.||||:..|:.|||...
Mouse   286 IRS---------STGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVF 341

  Fly   272 GVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYP 336
            |||::||::|....:::|||.|:|..|:|.|::||..|||.||:|:..:|....     :..|:.
Mouse   342 GVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTK-----RSWAWE 401

  Fly   337 PKPVAGDGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVR 401
            .|.|......|:...|.|...|:|.: ...|..|:             .:.|:....|.::....
Mouse   402 GKKVPEALEMKKKTPAAPTKKNTTFN-IVGTTYPI-------------NLAKDTEFSTISKSAAA 452

  Fly   402 PPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAI-YIDRSSRVL 465
            |...:              |||          |...|:....:.:||:.:...:: .:|:.||::
Mouse   453 PSASS--------------TPT----------AIASPKATYVQDSPAETKTYNSVSKVDKISRII 493

  Fly   466 FPALFASLNGIYWCVF 481
            ||.|||..|.:||..:
Mouse   494 FPVLFAIFNLVYWATY 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 133/468 (28%)
Neur_chan_LBD 38..235 CDD:280998 59/214 (28%)
Neur_chan_memb 243..>334 CDD:280999 38/90 (42%)
Gabra3NP_001344745.1 Neur_chan_LBD 100..509 CDD:332142 133/468 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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