DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and Gabra1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_006532258.1 Gene:Gabra1 / 14394 MGIID:95613 Length:553 Species:Mus musculus


Alignment Length:485 Identity:148/485 - (30%)
Similarity:237/485 - (48%) Gaps:70/485 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LVICTICMKHY---AKGEFQQSLAI-TDILPEDIKRYD-KMRPPKKEGQPTIVYFHVTVMGLDSI 67
            |::.|:..:.|   ::.|.:.:..: |.||...:..|| ::||...| :.|.|...:.|.....:
Mouse   114 LILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGE-RVTEVKTDIFVTSFGPV 177

  Fly    68 DENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWL--KNMWRPDSFFKNAKSVTFQTMTI 130
            .::.|.|..||||.|:|||.||:....||    :|.::.|  ..:|.||:||.|.|......||:
Mouse   178 SDHDMEYTIDVFFRQSWKDERLKFKGPMT----VLRLNNLMASKIWTPDTFFHNGKKSVAHNMTM 238

  Fly   131 PNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQW--DPTTPL 193
            ||..:.:.:|.|:||.::||::..|.|:...:|.|...|.|:..|.::|..:::::|  :|...:
Mouse   239 PNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSV 303

  Fly   194 VV-DENIELPQVALIRNETADCTQVY-STGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWV 256
            || ::...|.|..|: .:|.|...|. |||.:..:...|.|||::.|:|..||:|..|.||:|.|
Mouse   304 VVAEDGSRLNQYDLL-GQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQV 367

  Fly   257 SFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLIN 321
            |||:..|:.|||...|||::||::|....:::|||.|:|..|:|.|::||..|||.||:|:..:|
Mouse   368 SFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVN 432

  Fly   322 IVLSDTPIPKPMAYPPKPVAGDGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEM 386
            .            :..:..|.||                     .:::|      ||.:|:.|.:
Mouse   433 Y------------FTKRGYAWDG---------------------KSVVP------EKPKKVKDPL 458

  Fly   387 TKNRRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQER 451
            .|.......|.....|.|....|.:    :.|..:.||     .|:...||.:.|:||.|     
Mouse   459 IKKNNTYAPTATSYTPNLARGDPGL----ATIAKSATI-----EPKEVKPETKPPEPKKT----- 509

  Fly   452 LKRAIYIDRSSRVLFPALFASLNGIYWCVF 481
            ......|||.||:.||.||...|.:||..:
Mouse   510 FNSVSKIDRLSRIAFPLLFGIFNLVYWATY 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 143/456 (31%)
Neur_chan_LBD 38..235 CDD:280998 65/203 (32%)
Neur_chan_memb 243..>334 CDD:280999 38/90 (42%)
Gabra1XP_006532258.1 LIC 105..539 CDD:273305 148/483 (31%)
LGIC_ECD_GABAAR_A1 153..346 CDD:349835 63/198 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.