DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and CHRNB3

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_000740.1 Gene:CHRNB3 / 1142 HGNCID:1963 Length:458 Species:Homo sapiens


Alignment Length:385 Identity:77/385 - (20%)
Similarity:143/385 - (37%) Gaps:110/385 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FQIIILVI-----CTICMKHYAKGEFQQSLAITDILPEDIKRYDKMRPPKKEGQPTI-VYFHVTV 61
            |.::::|:     .|......|:.|       ..:|....:.|.|...|......|| |||.:.:
Human     5 FMLVLIVLGIPSSATTGFNSIAENE-------DALLRHLFQGYQKWVRPVLHSNDTIKVYFGLKI 62

  Fly    62 MGLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQ 126
            ..|..:||.:.....:|:..|.|.||:||                    |.||.:      ....
Human    63 SQLVDVDEKNQLMTTNVWLKQEWTDHKLR--------------------WNPDDY------GGIH 101

  Fly   127 TMTIPNHYMWL-----------------------YKDKTILYMVKLTLKLSCIMNFAIYPHDTQE 168
            ::.:|:..:||                       ..:.|:::....:.|.||.|:...:|.|.|.
Human   102 SIKVPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVWTPPASYKSSCTMDVTFFPFDRQN 166

  Fly   169 CKLQMESLSH--TTDDLIFQWDPTTPLVVDENI-----------ELPQVALIRNETADCTQVYST 220
            |.::..|.::  |..|||         :::||:           |:.....::....|  .||| 
Human   167 CSMKFGSWTYDGTMVDLI---------LINENVDRKDFFDNGEWEILNAKGMKGNRRD--GVYS- 219

  Fly   221 GNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLST---- 281
              :..:...|.|:|..::|.....||...:..::.:.|:: |.....:::|..:.|::|:.    
Human   220 --YPFITYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYL-PSDEGEKLSLSTSVLVSLTVFLLV 281

  Fly   282 --QHAKSQSSLPPV--SYLKAVDAFMS---VCTVFVFMALMEYCLINIVLSDTPIPKPMA 334
              :...|.|.:.|:  .||..:..|::   :.||||         ||:....:....|||
Human   282 IEEIIPSSSKVIPLIGEYLLFIMIFVTLSIIVTVFV---------INVHHRSSSTYHPMA 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 72/352 (20%)
LGIC_ECD_HisCl 51..235 CDD:349793 44/220 (20%)
Cys-loop 155..169 CDD:349793 5/13 (38%)
CHRNB3NP_000740.1 LIC 23..449 CDD:455710 74/367 (20%)

Return to query results.
Submit another query.