DRSC/TRiP Functional Genomics Resources

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Protein Alignment ort and gabra3

DIOPT Version :10

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_073791639.1 Gene:gabra3 / 100538116 ZFINID:ZDB-GENE-091204-365 Length:488 Species:Danio rerio


Alignment Length:467 Identity:143/467 - (30%)
Similarity:220/467 - (47%) Gaps:70/467 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TDILPEDIKRYD-KMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPE 93
            |.||...:..|| ::||.......|.|..::.|.....:.:..|.|..||||.|:|:|.||:...
Zfish    63 TRILDRLLDGYDNRLRPGLGAESVTEVRTNIYVTSFGPVSDTDMEYTIDVFFRQSWRDERLKFDG 127

  Fly    94 NMTQEYRLLEVDWL--KNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCI 156
            .|    ::|.::.|  ..:|.||:||.|.|......||.||..:.|..:.|:||.::||:...|.
Zfish   128 PM----QVLPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECP 188

  Fly   157 MNFAIYPHDTQECKLQMESLSHTTDDLIFQW---DPTTPLVVDENIELPQVALIRNETADCTQVY 218
            |:...:|.|...|.|:..|.::|.:::::.|   |..:..|..:...|.|..|:.:.....|...
Zfish   189 MHLEDFPMDAHACPLKFGSYAYTNNEVVYIWTADDEKSVSVAPDGSRLNQYDLLGHVIGKETISS 253

  Fly   219 STGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH 283
            |||.:..:...|.|||::.|:|..||:|..|.||:|.||||:..|:.|||...|||::||::|..
Zfish   254 STGEYVVMTTYFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLS 318

  Fly   284 AKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKE 348
            ..:::|||.|:|..|:|.||:||..|||.||:|:..:|.            :..:..|.||.|: 
Zfish   319 ISARNSLPKVAYATAMDWFMAVCYAFVFSALIEFATVNY------------FTKRSWAWDGQKE- 370

  Fly   349 GEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNR-RIVTTT--RRVVRPPLDADGPW 410
                                   |.|...:....|.:.|.|. .||.||  ..||:.|    |..
Zfish   371 -----------------------AQEMRRRESASFSKKTNNTFNIVGTTYSMSVVKDP----GLT 408

  Fly   411 IPRQESRIILTPTIAPPPPPPQPAAPEPELPK------PKLTPAQERLKRAIYIDRSSRVLFPAL 469
            ...:.:    |||.:.||.|.:    |..|||      |:...:..|:.:   :|:.||::||.|
Zfish   409 TISKSA----TPTTSTPPQPVR----EVRLPKMDGEYVPEGRKSYNRVSK---VDKISRIIFPVL 462

  Fly   470 FASLNGIYWCVF 481
            |...|..||..:
Zfish   463 FFIFNLGYWATY 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:455710 142/464 (31%)
LGIC_ECD_HisCl 51..235 CDD:349793 55/188 (29%)
Cys-loop 155..169 CDD:349793 4/13 (31%)
gabra3XP_073791639.1 None

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