DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and glra1

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002940962.2 Gene:glra1 / 100498379 XenbaseID:XB-GENE-6035798 Length:450 Species:Xenopus tropicalis


Alignment Length:484 Identity:155/484 - (32%)
Similarity:225/484 - (46%) Gaps:121/484 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRL---RLP 92
            |.|...|..||....|..:|.|..|..::.:....||.|.:|.|..::|..|.|.|.||   ..|
 Frog    44 DKLMGKISGYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRLNIFLRQQWNDPRLAYSEYP 108

  Fly    93 ENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIM 157
            ::...    |:...|.::|:||.||.|.|...|..:|..|..:.::|:..:||.::|||.|:|.|
 Frog   109 DDSLD----LDPSMLDSIWKPDLFFANEKGANFHEITTDNKLLRIFKNGNVLYSIRLTLTLACPM 169

  Fly   158 NFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIELPQVALIRNETAD---CTQVYS 219
            :...:|.|.|.|.:|:||..:|.:||||:|:....:.|.|.:.|||  .|..|..|   ||:.||
 Frog   170 DLKNFPMDVQTCIMQLESFGYTMNDLIFEWEEVGAVQVAEGLTLPQ--FILKEEKDLRYCTKHYS 232

  Fly   220 TGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHA 284
            ||.|||:|..|.|:|::.||:...|||:.:|||:|||||||..:||||||.||:|::||::||.:
 Frog   233 TGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSS 297

  Fly   285 KSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKPM---------------- 333
            .|::|||.|||:||:|.:|:||.:|||.||:||..:|.|...   .|.:                
 Frog   298 GSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ---HKELLRFRRRRRHHKEDENA 359

  Fly   334 -------AYPPKPVAGDGP----KKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMT 387
                   ||      |.||    .|:|.......:|:.||..|            .:.|..||| 
 Frog   360 EGRFSFAAY------GMGPACLQAKDGISMKGNNNNNPASSAQ------------PVSKSPDEM- 405

  Fly   388 KNRRIVTTTRRVVRPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERL 452
              |::.                                                          :
 Frog   406 --RKLF----------------------------------------------------------I 410

  Fly   453 KRAIYIDRSSRVLFPALFASLNGIYWCVF 481
            .||..||:.||:.||.:|...|..||.::
 Frog   411 SRAKKIDKVSRIGFPLVFLIFNTFYWIIY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 155/482 (32%)
Neur_chan_LBD 38..235 CDD:280998 72/202 (36%)
Neur_chan_memb 243..>334 CDD:280999 49/113 (43%)
glra1XP_002940962.2 LIC 10..439 CDD:273305 155/482 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.030

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