DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ort and gabrp

DIOPT Version :9

Sequence 1:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_017948119.2 Gene:gabrp / 100498164 XenbaseID:XB-GENE-1012959 Length:401 Species:Xenopus tropicalis


Alignment Length:465 Identity:121/465 - (26%)
Similarity:209/465 - (44%) Gaps:97/465 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPEN--MTQEY 99
            :|.|:|...||...:|..:...:.|..:|::.|.:|.|.|.:...|.|.|.||....|  :|.:.
 Frog    11 MKDYNKYLRPKFNEKPIEIAVSLEVASIDAVSEENMDYTATINLRQRWTDERLVFEGNRSITLDA 75

  Fly   100 RLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPH 164
            ||:|     ::|.||::..::|......:|:.|..:.|:.:.|:||.:::|..::|.|:...||.
 Frog    76 RLVE-----SLWVPDTYIVDSKKSFLHDVTVENRLVRLFANGTVLYAIRITTTVACKMDLTKYPM 135

  Fly   165 DTQECKLQMESLSHTTDDLIFQWDPTTPLVVD-ENIELPQVALIRNETADCTQVYSTGNFTCLEV 228
            |.|.||||:||..::..||.:.|......|.. ::::|.|..:.:..|.:......|||:..|.:
 Frog   136 DRQTCKLQLESWGYSEKDLTYVWMRANDSVRGMDHLQLAQYTVEQYYTTNSIGKDETGNYPRLAL 200

  Fly   229 VFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPV 293
            .|.|:|.:||::..||||:.::|::|||||||...:.|||...|||::|.::|....|:.:.|..
 Frog   201 CFILRRNVVYFILETYIPSALLVVLSWVSFWISMSSVPARTCFGVTTVLAMTTIMMGSRFNFPTA 265

  Fly   294 S-YLKAVDAFMSVCTVFVFMALMEYCL------INIVLSDTPIPKPMAYPPKPVAG--------- 342
            : .:||:|.::.:|..|||.||:||..      :|..::...|...:..|...::.         
 Frog   266 NCIIKAIDVYLGICFSFVFGALLEYAFAHYCSELNSAVNKEKIKNSLEEPEHDISSVLIACDSKQ 330

  Fly   343 -DGPKKEGEGAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVVRPPLDA 406
             :..:.:.|.||...|             |.:..|.|:                           
 Frog   331 LNRKENQTENAPEKNS-------------LKNSVIFKL--------------------------- 355

  Fly   407 DGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQERLKRAIYIDRSSRVLFPALFA 471
               |:   :.:||                   .|.|..:|..:.       :||.||.:||.:|.
 Frog   356 ---WL---KIKII-------------------RLKKFNVTNPEN-------VDRYSRTVFPLIFL 388

  Fly   472 SLNGIYWCVF 481
            .:|.|||..:
 Frog   389 IINIIYWTYY 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ortNP_524406.1 LIC 31..481 CDD:273305 121/463 (26%)
Neur_chan_LBD 38..235 CDD:280998 58/199 (29%)
Neur_chan_memb 243..>334 CDD:280999 35/97 (36%)
gabrpXP_017948119.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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